Csa6G002360 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G002360
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 286175 .. 286522 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGTGCCACCTTGTTCTTTGTCAGCATTGACAATTTTTCTCCTCTTGCAGACGCAGCCGCTCTACTCACTAATATTGCTCATGAAGCCGACGTTGAAATCTCACGCACACAGTTTTCCATAATCGCCACAGGATATTCCCATTGGTTCGTCGCTTCGCTGCATATTTGGGAACCGTTTTTCGCCAACTATTATATCGATGAAGATCCAATCACTTCAAGAATTTCTCTCCCAGCACTCCATCATTCTTTGAATCGAGCAAGAAATGCTCGTTTTTCTTCAATGATCATGCGTGTGCAGAAAAGCCAAAACTTCCTATTCTTTGAATTTACAAATTCAAGTTAG

mRNA sequence

ATGACCCGTGCCACCTTGTTCTTTGTCAGCATTGACAATTTTTCTCCTCTTGCAGACGCAGCCGCTCTACTCACTAATATTGCTCATGAAGCCGACGTTGAAATCTCACGCACACAGTTTTCCATAATCGCCACAGGATATTCCCATTGGTTCGTCGCTTCGCTGCATATTTGGGAACCGTTTTTCGCCAACTATTATATCGATGAAGATCCAATCACTTCAAGAATTTCTCTCCCAGCACTCCATCATTCTTTGAATCGAGCAAGAAATGCTCGTTTTTCTTCAATGATCATGCGTGTGCAGAAAAGCCAAAACTTCCTATTCTTTGAATTTACAAATTCAAGTTAG

Coding sequence (CDS)

ATGACCCGTGCCACCTTGTTCTTTGTCAGCATTGACAATTTTTCTCCTCTTGCAGACGCAGCCGCTCTACTCACTAATATTGCTCATGAAGCCGACGTTGAAATCTCACGCACACAGTTTTCCATAATCGCCACAGGATATTCCCATTGGTTCGTCGCTTCGCTGCATATTTGGGAACCGTTTTTCGCCAACTATTATATCGATGAAGATCCAATCACTTCAAGAATTTCTCTCCCAGCACTCCATCATTCTTTGAATCGAGCAAGAAATGCTCGTTTTTCTTCAATGATCATGCGTGTGCAGAAAAGCCAAAACTTCCTATTCTTTGAATTTACAAATTCAAGTTAG

Protein sequence

MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEPFFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS*

Homology

[Close]

BLAST of Csa6G002360 vs. TrEMBL
Match: A0A0A0KB79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002360 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.1e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEP 60
           MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEP
Sbjct: 1   MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEP 60

Query: 61  FFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS 116
           FFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS
Sbjct: 61  FFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS 115

[Close]

BLAST of Csa6G002360 vs. NCBI nr
Match: gi|700190438|gb|KGN45642.1| (hypothetical protein Csa_6G002360 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.4e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEP 60
           MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEP
Sbjct: 1   MTRATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEP 60

Query: 61  FFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS 116
           FFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS
Sbjct: 61  FFANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS 115

[Close]

BLAST of Csa6G002360 vs. NCBI nr
Match: gi|659116796|ref|XP_008458264.1| (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 9.3e-32
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 4   ATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEPFFA 63
           ATLFFVS+ NF+PLADAAAL +NI +EADV++SRTQ S+I    S WFVA LHIWEPFF 
Sbjct: 2   ATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFN 61

Query: 64  NYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNS 115
           +YYID+D ITSRISLP  H  +NRAR    SSM +R+QK  N+LF EF NS
Sbjct: 62  DYYIDKD-ITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKNS 111

[Close]

BLAST of Csa6G002360 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-07
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 6  LFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEPFFANY 65
          +F V + +F PL DA + L  IA EAD++ +   FSIIA+  S  FVA L +    F NY
Sbjct: 3  MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62

Query: 66 YIDEDPITSRISLPALHHSL 86
           +D D  TSRISL + H +L
Sbjct: 63 KVDNDH-TSRISLESFHDAL 81

[Close]

BLAST of Csa6G002360 vs. NCBI nr
Match: gi|659117591|ref|XP_008458682.1| (PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 34/110 (30.91%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 6   LFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHWFVASLHIWEPFFANY 65
           +F V ++ F PL DA +LL  +A +ADV+ +     II +  S  FVA+L +    F N+
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 66  YIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQNFLFFEFTNSS 116
            +D +  +S++SL   H ++       FSSM + +  + N +   F   S
Sbjct: 61  SVDHNK-SSKVSLQPFHDAM--LDGGSFSSMTIHLLDTTNQMVLRFETPS 107

The following BLAST results are available for this feature:

BLAST of Csa6G002360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB79_CUCSA	3.1e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002360 PE=4 SV=1	[more]

BLAST of Csa6G002360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190438\|gb\|KGN45642.1\|	4.4e-58	100.00	hypothetical protein Csa_6G002360 [Cucumis sativus]	[more]
gi\|659116796\|ref\|XP_008458264.1\|	9.3e-32	65.77	PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo]	[more]
gi\|659128753\|ref\|XP_008464355.1\|	7.9e-07	45.00	PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]	[more]
gi\|659117591\|ref\|XP_008458682.1\|	6.7e-06	30.91	PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G002360.1	Csa6G002360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 11..113 score: 1.
None	No IPR available	unknown	SSF55979	DNA clamp	coord: 10..113 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G002360	Lsi09G015450	Bottle gourd (USVL1VR-Ls)	culsiB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G002360	Cucumber (Gy14) v2	cgybcuB282
Csa6G002360	Melon (DHL92) v3.6.1	cumedB404
Csa6G002360	Silver-seed gourd	carcuB0073
Csa6G002360	Silver-seed gourd	carcuB0635
Csa6G002360	Watermelon (97103) v2	cuwmbB472
Csa6G002360	Wax gourd	cuwgoB534
Csa6G002360	Cucumber (Gy14) v1	cgycuB195
Csa6G002360	Cucurbita maxima (Rimu)	cmacuB368
Csa6G002360	Cucurbita maxima (Rimu)	cmacuB905
Csa6G002360	Cucurbita moschata (Rifu)	cmocuB357
Csa6G002360	Cucurbita moschata (Rifu)	cmocuB890
Csa6G002360	Melon (DHL92) v3.5.1	cumeB422
Csa6G002360	Watermelon (Charleston Gray)	cuwcgB480
Csa6G002360	Watermelon (97103) v1	cuwmB539
Csa6G002360	Cucurbita pepo (Zucchini)	cpecuB141
Csa6G002360	Cucurbita pepo (Zucchini)	cpecuB316