Csa6G002310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G002310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 256667 .. 257302 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTCAATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCCTGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGTTAGTATATACATTATTATTATATATAATACCCTTTTCTTCATGCATTTTTGTCATTTCTTGATCGGTTTGGTTCATTCATTTTATGGGAATTTCTTTATGAATTAACATGCATTGACTATGTTTAATATATTAATTTTTAAGGGCATTCACCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAGAGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAAGTAATTAA

mRNA sequence

ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTCAATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCCTGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGGCATTCACCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAGAGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAAGTAATTAA

Coding sequence (CDS)

ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTCAATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCCTGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGGCATTCACCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAGAGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAAGTAATTAA

Protein sequence

MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN*
Homology
[Close]
BLAST of Csa6G002310 vs. TrEMBL
Match: A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.4e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120
           YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN 164
           EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN 163

[Close]
BLAST of Csa6G002310 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.1e-32
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]
BLAST of Csa6G002310 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MF +K+   DPLLDA S F  I  D   +KF+ S F II+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120
           + V  DH  +VSL S H A+  G +++S+ IHL ++ N I L F+       P+  ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 EVPM-EDWSAGEIDFD-AKSFSIESDLFRDII 151
             P  ED   G+ + D  K F ++S   R II
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRII 152

[Close]
BLAST of Csa6G002310 vs. NCBI nr
Match: gi|700190433|gb|KGN45637.1| (hypothetical protein Csa_6G002310 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 4.9e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120
           YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN 164
           EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN 163

[Close]
BLAST of Csa6G002310 vs. NCBI nr
Match: gi|659131763|ref|XP_008465845.1| (PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 3.4e-40
Identity = 87/160 (54.37%), Postives = 110/160 (68.75%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MFSIKID + P L+   LF ++ + +ICLKF  ST SII RYQ P F  M+ +P+PLFAE
Sbjct: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120
           Y V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F
Sbjct: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTF 120

Query: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVD 161
            VPMEDWS G + FD K FSIES+LF DII  F  +NE D
Sbjct: 121 VVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEAD 160

[Close]
BLAST of Csa6G002310 vs. NCBI nr
Match: gi|700206404|gb|KGN61523.1| (hypothetical protein Csa_2G155090 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107

[Close]
BLAST of Csa6G002310 vs. NCBI nr
Match: gi|700190704|gb|KGN45908.1| (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MF +K+   DPLLDA S F  I  D   +KF+ S F II+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120
           + V  DH  +VSL S H A+  G +++S+ IHL ++ N I L F+       P+  ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 EVPM-EDWSAGEIDFD-AKSFSIESDLFRDII 151
             P  ED   G+ + D  K F ++S   R II
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRII 152

[Close]
BLAST of Csa6G002310 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 1 

Query: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60
           MF +K+   DPLLDA S    I  D   LKF+ S F IIA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120
           + V  DH  +VSL S H A+  G +++S+ IHL ++ N + L F+       P+  ++  
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 EVPM-EDWSAGEIDFD-AKSFSIESDLFRDII 151
             P  ED   G+ + D  K F ++S   R II
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRII 152

The following BLAST results are available for this feature:
BLAST of Csa6G002310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB76_CUCSA3.4e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1[more]
A0A0A0LIE0_CUCSA9.1e-3266.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1[more]
A0A0A0K902_CUCSA2.3e-1435.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1[more]
BLAST of Csa6G002310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190433|gb|KGN45637.1|4.9e-87100.00hypothetical protein Csa_6G002310 [Cucumis sativus][more]
gi|659131763|ref|XP_008465845.1|3.4e-4054.38PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo][more]
gi|700206404|gb|KGN61523.1|1.3e-3166.36hypothetical protein Csa_2G155090 [Cucumis sativus][more]
gi|700190704|gb|KGN45908.1|3.2e-1435.53hypothetical protein Csa_6G020220 [Cucumis sativus][more]
gi|659128729|ref|XP_008464344.1|9.4e-1435.53PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G002310.1Csa6G002310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 1..152
score: 1.
NoneNo IPR availableunknownSSF55979DNA clampcoord: 1..108
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G002310Lsi09G015420Bottle gourd (USVL1VR-Ls)culsiB394
Csa6G002310CSPI06G00290Wild cucumber (PI 183967)cpicuB314
Csa6G002310CsGy6G000350Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G002310Cucumber (Gy14) v1cgycuB195
Csa6G002310Cucurbita maxima (Rimu)cmacuB368
Csa6G002310Cucurbita maxima (Rimu)cmacuB905
Csa6G002310Cucurbita moschata (Rifu)cmocuB357
Csa6G002310Cucurbita moschata (Rifu)cmocuB890
Csa6G002310Melon (DHL92) v3.5.1cumeB422
Csa6G002310Watermelon (Charleston Gray)cuwcgB480
Csa6G002310Watermelon (97103) v1cuwmB539
Csa6G002310Watermelon (97103) v1cuwmB546
Csa6G002310Cucurbita pepo (Zucchini)cpecuB141
Csa6G002310Cucurbita pepo (Zucchini)cpecuB316
Csa6G002310Melon (DHL92) v3.6.1cumedB404
Csa6G002310Silver-seed gourdcarcuB0073
Csa6G002310Silver-seed gourdcarcuB0635
Csa6G002310Watermelon (97103) v2cuwmbB472
Csa6G002310Wax gourdcuwgoB534