Csa6G000700 (gene) Cucumber (Chinese Long) v2

NameCsa6G000700
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 141017 .. 141368 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGATGAGAGCGGGTTTTCGTACTGTTATTGCAAATTTCGTCTTTCTTCATTTTCTTTTAAGAATATCTTTCAATTTGGTGAGGTTTGGCTATGAAAGAAAGCCCGCCACAAGAATTATGTATCGTAGTCTAGATTTATCAAATATTATCAGCCATTTTCTGTGCTCTCATTGTAGGTTTTGCAACACTACTTACTTGGCATCTTTTGGTGGCATTCATGCAGATGCTCAAAGCTTTAAGTACATGCCGAGGAAAATGCATATATATTTTTATAATGATTTTGTTTGGAAATACCTCACTTCATAATCACCACCTTCCAGTGTGGCAACATTTTTAGTGGTTGGTATGAAC

mRNA sequence

ATGATGAGAGCGGGTTTTCGTACTGTTATTGCAAATTTCGTCTTTCTTCATTTTCTTTTAAGAATATCTTTCAATTTGGTGAGGTTTGGCTATGAAAGAAAGCCCGCCACAAGAATTATGTATCGTAGTCTAGATTTATCAAATATTATCAGCCATTTTCTGTGCTCTCATTGTAGGTTTTGCAACACTACTTACTTGGCATCTTTTGGTGGCATTCATGCAGATGCTCAAAGCTTTAAGTACATGCCGAGGAAAATGCATATATATTTTTATAATGATTTTGTTTGGAAATACCTCACTTCATAA

Coding sequence (CDS)

ATGATGAGAGCGGGTTTTCGTACTGTTATTGCAAATTTCGTCTTTCTTCATTTTCTTTTAAGAATATCTTTCAATTTGGTGAGGTTTGGCTATGAAAGAAAGCCCGCCACAAGAATTATGTATCGTAGTCTAGATTTATCAAATATTATCAGCCATTTTCTGTGCTCTCATTGTAGGTTTTGCAACACTACTTACTTGGCATCTTTTGGTGGCATTCATGCAGATGCTCAAAGCTTTAAGTACATGCCGAGGAAAATGCATATATATTTTTATAATGATTTTGTTTGGAAATACCTCACTTCATAA

Protein sequence

MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRFCNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS*
BLAST of Csa6G000700 vs. TrEMBL
Match: A0A0A0KB62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000700 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.5e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRF 60
           MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRF
Sbjct: 1   MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRF 60

Query: 61  CNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS 102
           CNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS
Sbjct: 61  CNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS 101

BLAST of Csa6G000700 vs. NCBI nr
Match: gi|700190418|gb|KGN45622.1| (hypothetical protein Csa_6G000700 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 6.4e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRF 60
           MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRF
Sbjct: 1   MMRAGFRTVIANFVFLHFLLRISFNLVRFGYERKPATRIMYRSLDLSNIISHFLCSHCRF 60

Query: 61  CNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS 102
           CNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS
Sbjct: 61  CNTTYLASFGGIHADAQSFKYMPRKMHIYFYNDFVWKYLTS 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KB62_CUCSA4.5e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700190418|gb|KGN45622.1|6.4e-53100.00hypothetical protein Csa_6G000700 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU141216cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G000700.1Csa6G000700.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU141216CU141216transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None