Csa6G000050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G000050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSerologically defined colon cancer antigen-like protein; contains IPR021846 (Protein of unknown function DUF3441)
LocationChr6 : 28214 .. 30338 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGATGATATTCACGAAATAGGGGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACTGGAAATCCTTTGGCTACGGACATTCTTTTGTATGCTGTGCCAGTCTGCGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGACCTCTCAAGAAAGGGAAAGGTAAACTAGCTTCAGTCTTCATTACTAATACCATATTTATAGATAAAATAGAACCTTTAGGTTTAATTACAAGCTTAGTTTATGTCTATTTAGTCTCTAATCTTTAAAAAAATGTCTAATAAATCCTTTAGGGCTGGCTCTAACAGTAACCATTTGGTTTTCAGGCTTTAGAAACTGACCTTATTTTCTCACAATTTGTTACTCATGTTTTTATATTTTCAAGTCTTAGTCAATTTTTGAACAAAATTTTCAAAGTTTGTCTTTGATTTTGAAAAAAACACTCCTAAAACGTTGACAATAGAGCATAAAAACCAATAGATGAAAGTTGTGTTGATAGACTTAGTTTTTCAAAACCGAAAACCAAAACCAAATAGTTAACAAGTATGCTAGGATTTTCAAATTTGTTTATAATAAATTCTTCAATTTTTGAAACAAAATGTTAATAGGTCACGGAACTTTCCATTTTAATTTTGTATTTAATTAATTCTTGAGCTATTTGAAAATTTAAAAATTATATGGTCTATTAGATATATAATTAGATTTTATGTATAGTTAAGTCTTGAGCTCACCATTCACGTCTTGTAGATTTGTGAATAGATTGAGTACCTAATAGACATAAAAATGGAAATTTTAGAGACCTATTGGAGAAAAAATTGAAAGAATAAGCTTGACTTATTAGACATTTTTTAAGGTTCAAGGACTAAATAGATTCAAACATGAAAGAACATATAATTGAACGGAACCTCTGTGGGGATCAATGGCATTCCATTTTCAAGTGATTCCATTCCATAACCTTGCTCTTTGTCCACTTGTTTCCAGCTGCAAAAACTGCCTTGAACCTGTTCACACATATGCCTGAAGCAACAACAAGAGAGAAAGAATTGATCAAAGCATGCACAGATCCAGAGCTTGTTGCTGCCATCATCGGGAATGCTCGGGTTACCGCGGCCGGTCTCACTCAGTTAAAGCAGAAGCAGAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAGCTGTTGCTGCTATTGTCTCTTCGCCATCTTCCTGTTTAAGCCTTGCTAGCCTCTTAATTAACCTCACCCAACTTACGTTTGAGAAATTTTCATGTGGATCTCATTGTCATTACTATGAAAAAAATCTAGAAATGTCTGTACAGTGCATATATGTAAAAGTTTAGCCTTCGAAAACAGCCGATAAAATTAGAATGATACAAAGAAGATTAGCGTGATTCCTGCACATGGATGACATGCATAAATTGAGAAATGTAAAAGTATTTTGGTGGAAAAAAAAACCTTACAGATCTCTTAATACATTGGGCTCTATTGTAACTTCCGAGATTAAAGAGGTTTTTTTTCTAAAAATGTTTTAAGTGTGAATTATTAGGATAAACAGACTATTACTTGTGTTGTATGGGTGGGGAATGGATTTAATACTTAATCATATAGTATCTATAGCGTATTGTTTTGTAAATTTTGTGTTTTTATCTTGAACTTAAAAGTTTAATTTTTTTATCTCACATATTATTATGAAAACTCAATTGTTTTAACATAACAAAAAAAATCTAAAAATGCATGTGTTTCTTTCTCAATGTTTCTATTGTTGAGATTATTTTTGTTAGATTCACAATTACTATAATGTTAGTTTGTTTGTCATAATTCTTTCTCTGTCATCATTCTTTGTTGTATTCAATACAGGAAGAGGGGGTGAGGAATTTAAACCTCTAGTTTTTGTTCTAAAGTACATCATTTATTATTATTATTGTTTTTTTTATTTACATAAAAGAGCAAATGGTCTTCGATTTCTTTTTTCCATAAACGTTGATTGCTTGTTCGATCCTTTTGTTTGGACGGTGGTTGTGCTTTCTTTTACATTTGGAAGGTTGGAAGATGCTTTGCTTTATATATATGTATGTATATATATTAGGTTAACTAA

mRNA sequence

ATGGAAGAGGATGATATTCACGAAATAGGGGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACTGGAAATCCTTTGGCTACGGACATTCTTTTGTATGCTGTGCCAGTCTGCGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGACCTCTCAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACACATATGCCTGAAGCAACAACAAGAGAGAAAGAATTGATCAAAGCATGCACAGATCCAGAGCTTGTTGCTGCCATCATCGGGAATGCTCGGGTTACCGCGGCCGGAAGAGGGGGTGAGGAATTTAAACCTCTAGTTAACTAA

Coding sequence (CDS)

ATGGAAGAGGATGATATTCACGAAATAGGGGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACTGGAAATCCTTTGGCTACGGACATTCTTTTGTATGCTGTGCCAGTCTGCGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGACCTCTCAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACACATATGCCTGAAGCAACAACAAGAGAGAAAGAATTGATCAAAGCATGCACAGATCCAGAGCTTGTTGCTGCCATCATCGGGAATGCTCGGGTTACCGCGGCCGGAAGAGGGGGTGAGGAATTTAAACCTCTAGTTAACTAA

Protein sequence

MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPLKKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN*
Homology
[Close]
BLAST of Csa6G000050 vs. Swiss-Prot
Match: NEMF_HUMAN (Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4)

HSP 1 Score: 104.8 bits (260), Expect = 6.9e-22
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = 1 

Query: 2    EEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPLK 61
            EE D+ + G EE    N  D LTG P   D+LL+A+P+C PY  + +YKY VK+ PG  K
Sbjct: 966  EEQDLDQQGNEE----NLFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQK 1025

Query: 62   KGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTA 108
            KGKAAKTALN F H  EAT REK+L ++  D +L   I G  +V+A
Sbjct: 1026 KGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSA 1067

[Close]
BLAST of Csa6G000050 vs. Swiss-Prot
Match: NEMF_MOUSE (Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-21
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 1 

Query: 2    EEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPLK 61
            EE D+ + G EE    N  D LTG P   D+L++A+P+C PY  + +YKY VK+ PG  K
Sbjct: 954  EEHDLDQQGNEE----NLFDSLTGQPHPEDVLMFAIPICAPYTIMTNYKYKVKLTPGVQK 1013

Query: 62   KGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTA 108
            KGKAAKTALN F H  EAT REK+L ++  D +L   I G  +V+A
Sbjct: 1014 KGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSA 1055

[Close]
BLAST of Csa6G000050 vs. Swiss-Prot
Match: NEMF_DROME (Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster GN=Clbn PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 19  DVDYL---TGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPLKKGKAAKTALNLFTH 78
           DVD L   TG P   D LL+A+PV  PY A+Q+YK+ VK+ PG  K+GKAAK ALN+F  
Sbjct: 893 DVDVLNSLTGQPHEGDELLFAIPVVAPYQALQNYKFKVKLTPGTGKRGKAAKLALNIFAK 952

Query: 79  MPEATTREKELIKACTDPELVAAIIGNARVTA 108
               + REK+L+K+  +  L   I G  +++A
Sbjct: 953 EKSCSAREKDLLKSIKEESLARNIPGKVKLSA 984

[Close]
BLAST of Csa6G000050 vs. Swiss-Prot
Match: RQC2_SCHPO (Ribosome quality control complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr1 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-07
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 1 

Query: 20   VDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPLKKGKAAKTALNLFTHMPEA 79
            +D LT NP   D ++ AVP   PYNA+  +   VK++PG  K GKAA+ ++  F      
Sbjct: 922  IDSLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLPK 981

Query: 80   TTREKELIKACTDPELVAAI 100
            +++E   ++   D E+VA I
Sbjct: 982  SSKEAAYLENLKDGEIVAPI 1001

[Close]
BLAST of Csa6G000050 vs. TrEMBL
Match: A0A0A0K7B9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000050 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
           MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL
Sbjct: 1   MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60

Query: 61  KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN 120
           KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN
Sbjct: 61  KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN 120

[Close]
BLAST of Csa6G000050 vs. TrEMBL
Match: A0A151R166_CAJCA (Serologically defined colon cancer antigen 1 isogeny OS=Cajanus cajan GN=KK1_042574 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-48
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEE+EKLNDVDYLTGNPL  DILLYAVPVCGPYNAVQSYKY VKI+PGP 
Sbjct: 943  MEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPA 1002

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLF+HM EAT+REKEL+KACTDPELVAAIIGN +++AAG
Sbjct: 1003 KKGKAAKTAMNLFSHMSEATSREKELMKACTDPELVAAIIGNVKISAAG 1051

[Close]
BLAST of Csa6G000050 vs. TrEMBL
Match: B9RZW2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1002400 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.7e-48
Identity = 94/109 (86.24%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEE++ KLND DYLTGNPLA+DILLYAVPVCGPY+AVQSYKY VKIVPG  
Sbjct: 965  MEEDDIHEIGEEDKGKLNDTDYLTGNPLASDILLYAVPVCGPYSAVQSYKYRVKIVPGTA 1024

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLF+HMPEAT+REKEL+KACTDPELVAAIIGNA++TAAG
Sbjct: 1025 KKGKAAKTAMNLFSHMPEATSREKELMKACTDPELVAAIIGNAKITAAG 1073

[Close]
BLAST of Csa6G000050 vs. TrEMBL
Match: A0A0L9VDD9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g172900 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.7e-48
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEE+EKLNDVDYLTGNPL  DILLYAVPVCGPY+A+QSYKY VKI+PGP 
Sbjct: 1036 MEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYSALQSYKYRVKIIPGPA 1095

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLF+HM EATTREKEL+KACTDPELVAAIIGN +++AAG
Sbjct: 1096 KKGKAAKTAMNLFSHMSEATTREKELMKACTDPELVAAIIGNVKISAAG 1144

[Close]
BLAST of Csa6G000050 vs. TrEMBL
Match: V7BN64_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G121000g PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-47
Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEE+EKLNDVDYLTGNPL  DILLYA+PVC PYNA+QSYKY VKI+PGP 
Sbjct: 1010 MEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAIPVCSPYNALQSYKYRVKIIPGPA 1069

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLF+HM EATTREKEL+KACTDPELVAAIIGN +++AAG
Sbjct: 1070 KKGKAAKTAMNLFSHMSEATTREKELMKACTDPELVAAIIGNVKISAAG 1118

[Close]
BLAST of Csa6G000050 vs. TAIR10
Match: AT5G49930.1 (AT5G49930.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 190.3 bits (482), Expect = 7.1e-49
Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHE+G+EE+EKL DVDYLTGNPL TDILLYAVPVCGPYNA+QSYKY VK +PG +
Sbjct: 952  MEEDDIHEVGDEEKEKLIDVDYLTGNPLPTDILLYAVPVCGPYNALQSYKYRVKAIPGSM 1011

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLFTHM EA+ REKEL+KACTDPEL+AA++GN ++TAAG
Sbjct: 1012 KKGKAAKTAMNLFTHMSEASVREKELMKACTDPELMAALVGNVKITAAG 1060

[Close]
BLAST of Csa6G000050 vs. NCBI nr
Match: gi|700190401|gb|KGN45605.1| (hypothetical protein Csa_6G000050 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.3e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
           MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL
Sbjct: 1   MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60

Query: 61  KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN 120
           KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN
Sbjct: 61  KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGRGGEEFKPLVN 120

[Close]
BLAST of Csa6G000050 vs. NCBI nr
Match: gi|449441522|ref|XP_004138531.1| (PREDICTED: nuclear export mediator factor Nemf [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL
Sbjct: 992  MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1051

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG
Sbjct: 1052 KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 1100

[Close]
BLAST of Csa6G000050 vs. NCBI nr
Match: gi|659116892|ref|XP_008458314.1| (PREDICTED: nuclear export mediator factor Nemf [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL
Sbjct: 992  MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 1051

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG
Sbjct: 1052 KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 1100

[Close]
BLAST of Csa6G000050 vs. NCBI nr
Match: gi|747050560|ref|XP_011071357.1| (PREDICTED: nuclear export mediator factor NEMF [Sesamum indicum])

HSP 1 Score: 201.8 bits (512), Expect = 6.7e-49
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEE+EKLNDVDYLTGNPL  D+LLYAVPVCGPYNA+QSYKY VKI+PG L
Sbjct: 999  MEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDVLLYAVPVCGPYNALQSYKYRVKIIPGTL 1058

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLF+HMPEATTREKEL+KACTDPELVAAIIGN +V+AAG
Sbjct: 1059 KKGKAAKTAMNLFSHMPEATTREKELMKACTDPELVAAIIGNVKVSAAG 1107

[Close]
BLAST of Csa6G000050 vs. NCBI nr
Match: gi|1012324299|gb|KYP36314.1| (Serologically defined colon cancer antigen 1 isogeny [Cajanus cajan])

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-48
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 1 

Query: 1    MEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPL 60
            MEEDDIHEIGEEE+EKLNDVDYLTGNPL  DILLYAVPVCGPYNAVQSYKY VKI+PGP 
Sbjct: 943  MEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPA 1002

Query: 61   KKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAG 110
            KKGKAAKTA+NLF+HM EAT+REKEL+KACTDPELVAAIIGN +++AAG
Sbjct: 1003 KKGKAAKTAMNLFSHMSEATSREKELMKACTDPELVAAIIGNVKISAAG 1051

The following BLAST results are available for this feature:
BLAST of Csa6G000050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NEMF_HUMAN6.9e-2250.00Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4[more]
NEMF_MOUSE2.0e-2149.06Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2[more]
NEMF_DROME8.2e-1545.65Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster GN=Clbn P... [more]
RQC2_SCHPO1.7e-0736.25Ribosome quality control complex subunit 2 OS=Schizosaccharomyces pombe (strain ... [more]
BLAST of Csa6G000050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7B9_CUCSA3.7e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000050 PE=4 SV=1[more]
A0A151R166_CAJCA2.3e-4886.24Serologically defined colon cancer antigen 1 isogeny OS=Cajanus cajan GN=KK1_042... [more]
B9RZW2_RICCO6.7e-4886.24Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1002400 PE=4 SV=1[more]
A0A0L9VDD9_PHAAN6.7e-4885.32Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g172900 PE=4 SV=1[more]
V7BN64_PHAVU1.1e-4784.40Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G121000g PE=4 SV=1[more]
BLAST of Csa6G000050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49930.17.1e-4979.82 zinc knuckle (CCHC-type) family protein[more]
BLAST of Csa6G000050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190401|gb|KGN45605.1|5.3e-62100.00hypothetical protein Csa_6G000050 [Cucumis sativus][more]
gi|449441522|ref|XP_004138531.1|3.6e-55100.00PREDICTED: nuclear export mediator factor Nemf [Cucumis sativus][more]
gi|659116892|ref|XP_008458314.1|3.6e-55100.00PREDICTED: nuclear export mediator factor Nemf [Cucumis melo][more]
gi|747050560|ref|XP_011071357.1|6.7e-4987.16PREDICTED: nuclear export mediator factor NEMF [Sesamum indicum][more]
gi|1012324299|gb|KYP36314.1|3.3e-4886.24Serologically defined colon cancer antigen 1 isogeny [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021846DUF3441
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103822cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G000050.1Csa6G000050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103822CU103822transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021846Domain of unknown function DUF3441PFAMPF11923DUF3441coord: 11..106
score: 1.3
NoneNo IPR availablePANTHERPTHR15239UNCHARACTERIZEDcoord: 1..116
score: 4.4
NoneNo IPR availablePANTHERPTHR15239:SF6NUCLEAR EXPORT MEDIATOR FACTOR NEMFcoord: 1..116
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G000050Lsi09G015120Bottle gourd (USVL1VR-Ls)culsiB394
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G000050Watermelon (97103) v2cuwmbB472
Csa6G000050Wax gourdcuwgoB535
Csa6G000050Cucumber (Gy14) v1cgycuB195
Csa6G000050Cucurbita maxima (Rimu)cmacuB368
Csa6G000050Cucurbita moschata (Rifu)cmocuB357
Csa6G000050Melon (DHL92) v3.5.1cumeB422
Csa6G000050Watermelon (Charleston Gray)cuwcgB480
Csa6G000050Watermelon (97103) v1cuwmB546
Csa6G000050Cucurbita pepo (Zucchini)cpecuB141
Csa6G000050Cucumber (Gy14) v2cgybcuB282
Csa6G000050Melon (DHL92) v3.6.1cumedB404
Csa6G000050Silver-seed gourdcarcuB0073