Csa5G647420 (gene) Cucumber (Chinese Long) v2

NameCsa5G647420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 27365938 .. 27367828 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGCTTAAACAACAGGCTCCGATCAGAGGGTCGCTTTGAGGTTATGTATGCATTGTTGGATTCAAATTGTGACCTCTCTTATTGTATTGAATCAGATTTGTCTCCTTTTCTAAGTGTCCGAGGAAGGATAATATGGCTTAGCAATCGTTAGCGAAGCCAGCAGTTGCGCTCTTCTTCTTCTTCTTCCTCTTCTTTGGAAGATTTGATGGTGTGTTTTCGGGAACTAAATTTCCATTTCCGTCTCCTCTATTGTGTGTGAGGAAGGCATGTGTGTGTAATATTTAGTTGTTGCTTTATTCTTCGTTCTTATTTTTTATAAAGAACTTAAAGTAATATTATCTTTCATATATATATATATAAAGTTTAGGTTTAAAATTAATAAGAGGAAAGACGTCTCCAGCCTTCCTCTTCGCGTACCAAGACTTCCGAAACTCACTGCCGCCCGCGGTTTCCCTCCGACTAACCTCCCTACGGCGCACGTCGTCTCCGGCTCACGCTGCCCTCGACCACTGGTCTGCCTCCCGCCTGTTTTTCTTTCTCCCAATCCATCTCTCGCAGCTCTCTGTCTCCCCTTAAAATCACGTCCTTCGGCCACCGCCGCCGCCGGGTAAGAATGCTTAAGTCCTTTTGGGTAAGATTCAGTGCGTGGGAGTGCTCCAAACTCCTTTCCAACTCAAATGAGGTTCTTTAAAATTGTCCCTAATAGTTGGAAGCTAATAGTTGTGAATTTGGAGTAGAGTAGCTTAAAATTAATTCGAACACTTCTATGCAAAGTTTGAAGTCCGTCTTGGTGAGTGTCAGGTGGGAAAGCTTTGTTCCGGTCTTTCCGAACTCTTAATTGTATAATACGAGGAGTTTTGGACTCCTGGACTTGTTCCAATGAAGACTTGAGCTTTTTTGGGTAAGATTTAGGTGTTGAAGTATTGTTGGACCCTTTCGAACTCTTAGCAAGTACTGTAAATTGTATAATACGAAATAATTCTCTACGACACCCAAATGCAAATGCTGTAGGGTAAAGCGGATTGTGCTTGGAGTCAGTCACTTATGTTTGAAACTCTGTTTTTGTAGTTAGGACCTGATTCGTAGTGTTTAGTTTAAGAGTTAAGGTTTTGGGTAAGGATTATCTCCTCCAGATTTTTTAAGTATTGATTTAAGATTTCGAGTTGATTTATGTCGTGTTCCTGTTACTTTTCTTAGTTGGGTACCCATTCGGCTTGTTTTAGGAGTACGATAGGTAAGTAGACTTCTACGAAATTCTGAAATAGTTGTGTGTGGTCATGATTGGCATGCCTCGATGCATGTGGATGTTCTGATTTATATGGTTCAACACGACTGGATGCTTGTTGTGATGATTGTAAAGTATAGTATGCCTTTGCACCTTGTTGTTACCCTATCTCTATTAGTGCATTATATATCTATGAAAAAACATAGTTTTTATAGCATTTCAATATGGGATTTACTAAATCAAGTATTCTTGTTGCTGCCTTCATCACCCTTTTCATTCGCTTAGGAAAAATAACTAAAACTAGAGAATATTATAGGAAGAAATTATCAAGAGATTAAGTTGATATTAAACAATAGTTTCTTGAGCAAAAGTATTGCAGATCCAAGTTAGTTGTCTAGTATCTCAAACTGTTTTTTTAAACAATATTAAAAATCCTGCATATCCAAATCAAAAAGTCCCTCTAACCCTTGGACTACACTTGTTTAAATGGGCTAAAATAGGTGGTCTTATATGGGAGCTTATCTTCCATATCAAACATGTCTCCTCTGAGTTGATTAACAATAAAATCATGTAAAATTCTACATTGGTTCTTTTTGTTCTTGACCTTCTTTCTCACTAGTCATTCTTTCACAGGGAAATAAATAATGAAGTTGAAGCTTGA

mRNA sequence

ATGTTTAGCTTAAACAACAGGCTCCGATCAGAGGGTCGCTTTGAGGTTATGTTTAAAATTAATAAGAGGAAAGACGTCTCCAGCCTTCCTCTTCGCGTACCAAGACTTCCGAAACTCACTGCCGCCCGCGGTTTCCCTCCGACTAACCTCCCTACGGCGCACGTCGTCTCCGGCTCACGCTGCCCTCGACCACTGGTCTGCCTCCCGCCTGTTTTTCTTTCTCCCAATCCATCTCTCGCAGCTCTCTGTCTCCCCTTAAAATCACGTCCTTCGGCCACCGCCGCCGCCGGGGAAATAAATAATGAAGTTGAAGCTTGA

Coding sequence (CDS)

ATGTTTAGCTTAAACAACAGGCTCCGATCAGAGGGTCGCTTTGAGGTTATGTTTAAAATTAATAAGAGGAAAGACGTCTCCAGCCTTCCTCTTCGCGTACCAAGACTTCCGAAACTCACTGCCGCCCGCGGTTTCCCTCCGACTAACCTCCCTACGGCGCACGTCGTCTCCGGCTCACGCTGCCCTCGACCACTGGTCTGCCTCCCGCCTGTTTTTCTTTCTCCCAATCCATCTCTCGCAGCTCTCTGTCTCCCCTTAAAATCACGTCCTTCGGCCACCGCCGCCGCCGGGGAAATAAATAATGAAGTTGAAGCTTGA

Protein sequence

MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSRCPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA*
BLAST of Csa5G647420 vs. TrEMBL
Match: A0A0A0KSP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647420 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

Query: 1   MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSR 60
           MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSR
Sbjct: 1   MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSR 60

Query: 61  CPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA 106
           CPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA
Sbjct: 61  CPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA 105

BLAST of Csa5G647420 vs. NCBI nr
Match: gi|700197443|gb|KGN52620.1| (hypothetical protein Csa_5G647420 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

Query: 1   MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSR 60
           MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSR
Sbjct: 1   MFSLNNRLRSEGRFEVMFKINKRKDVSSLPLRVPRLPKLTAARGFPPTNLPTAHVVSGSR 60

Query: 61  CPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA 106
           CPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA
Sbjct: 61  CPRPLVCLPPVFLSPNPSLAALCLPLKSRPSATAAAGEINNEVEA 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KSP9_CUCSA1.8e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700197443|gb|KGN52620.1|2.5e-52100.00hypothetical protein Csa_5G647420 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101404cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G647420.1Csa5G647420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101404CU101404transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None