Csa5G637770 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G637770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 26487561 .. 26489925 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCTATGTTGAAGTTGGAAGTGATGATTATCAAAGTTGGTTATTGTCGAATAATATTTTTGTTAGAGCAAGGTAGGTTGATGATGAGCGGGTGGTAAATAACCGACGACAACACTATTGAAGAAAATCAAATTATTTAATTTTTTTAATTACACCCCACCTTAATTTGATTCAAGAAATCAAATTGGAAAGCAACATTAAGAATAGTTTTTCTAAAAAAATAAAAATTAAGAATTCAAGTAAAGCAAACAAACAAAAATGTAATGATTTTTTTCTTAAAAAAAGTACTTCTAGGGTTGTTATTTGCAAACAATACAATTCACTAGAATTTTCATTTGTTAGTAGTTGGGAGCACAACCATTTTAATTATAATAAAGGAATTTGGATTTTGGCCTAATTGAATTAAGATGCATTATATATATGTATATATAATGGAAAATATATAAAATTAAATTAAAAAAAGTAAAGAAAAAAGAAAAAGATTCTTCACCAAATATTAATTAAAATAATTAAAGAGTGTTAGCATATGCAATGAAACTTTCTAGGAAATTGAAACAATTTCTAAACCAATTAGTCTTTTCCAATTATTCAATTTCTAGGGTTTGGAGAATTTTATTTAATTGTTTTTTTATATTATGATTATTTTATTCATTGGTGCACAAAAATCAATATTTTAAACAAATGAAATTAATGAAGATATGGAAGCAAGAATGAGCCTTTCTCCAATTTCATTAATGGCCTTATTAATTTAATATCATCTTTGGAAAAGATAAGTGTGGTTTGTCCATTTGTTTTCTTTCTATTGTATTCAAAATTATACAATAATGCTTACTTTGTCCTCTTGAAAAAATACAAATTACAAATAGACCAAAATAAGGATTAAATTTCTCACTAAAAAAACTAAACTATAAAGTAAGAAACTACCATGAAATATTTTAACCTTTCATTTGAATTTAAATGGTAAGACATGCACTATACTTTCTTGGTTGAAGGACTAAATTCACTCGTCTCATTTAACATGTTACATCCATATCACAATTAAGCTAAATTAACGAAATCTTTCGGATTAATATTTTTCTCACAGTTTGATTTATTTAGATTTGTATGACATAGTGGAATTTAGTATAACTCAATCGTGAATCAATTTAAACTTAGATATATATTCCTTCAATTAAATAATAAAGAAGTTTGAATTGCTAATAAACTCTAAATCGATTTGGTGTATTTGAAACACTAGTTTACTTCTTACTTTCAAAATTTTCTAAGTAAGGATTACAACAGGGAACCTCAATCAAAAATTTATTATCAGTAATTTTTCAAAGTTTCATTGAGACCTATCATCCCATTAAACGTCAACGTTATTGAAAATAAATCTAAGTTTATTGGGACCTTTAATAAGATTAAGAGGTTAGGGCTTTACCGAATCATAAAATTGAAAATTAAAATTTAGAGTATAGTTTGATTTTATATGAAAAACTATCAACGCCAAATTTAATCATTAGATTCCTTATAACATTTAGAAGAAAGAAGAAGGAAAGATAGGTAGCCGGATCGGCCCAATAGTTTTAAAAGGCTAGGGCCCAACTTGAAGCCCAATATGATGAGCCTAGTCAAATTCTTTTATTTTTTATACTTTTTAGCATCTTCTTTGTTTTCTCTCCTGAACGAAACGACGACTTTTCTCCCGACCTCCAAGCTCCGGTGAAGGATTTCAAGACTCTTCAACTTGACCCGAATTCTGATATTGCACCATTGGTTCTTCATCGCCTCTTTCCACCGCTGCTATTTCTGCGTTTTTTCTTTCATTTTCTATTCCAGGTACACACATTCTTCTAATTTTGCTCTGAATTGTGGGGATTCAATTCAATTAGTACTTTTAATGGCTTCAGTTGCTGATTATATGGGAATTCGTTAGATTTTTATGTGTTTTCATTCTAAATCTGATTGGGCGAAAGAAGAATTTGTATATAGCGAGTAGTTGTTTTTCATTAGATTGAAATGAATTATTTAGGATTGAAGAAGGAAAATCCCTTCTCATCTCTCTCCTTCAATCTCTTCTCTCTTCCTCTCTCATGAGTGAACGGCGGTCCCTTTCGAACACCCATGAACAGATCTGAGACCCACGCACATGAACACGCACGAACATGAAGTTCTCTACGAGTTGAGTAAATAGCGAAAGCTTAGTTGGCTTTAATACATTTGTTCAATTAAGTATGAAGTATTACTTATTAGTTTAGGCTGAAATTTGGGGTCTTTACATTGAAAACCATGTGAAAATTGTAGTTTTCATCCTCGTTTTGATGATTTTTTTACTGTATTTGATTCTTGATTTCAAAGGTGGCTGATTCACTTGAAATTTGA

mRNA sequence

ATGTTGTCTATGTTGAAGTTGGAAGTGATGATTATCAAAGTTGGTTATTGTCGAATAATATTTTTGTTAGAGCAAGGTAGGTTGATGATGAGCGGGTGCATCTTCTTTGTTTTCTCTCCTGAACGAAACGACGACTTTTCTCCCGACCTCCAAGCTCCGGTGAAGGATTTCAAGACTCTTCAACTTGACCCGAATTCTGATATTGCACCATTGGTTCTTCATCGCCTCTTTCCACCGCTGCTATTTCTGCGTTTTTTCTTTCATTTTCTATTCCAGGTGGCTGATTCACTTGAAATTTGA

Coding sequence (CDS)

ATGTTGTCTATGTTGAAGTTGGAAGTGATGATTATCAAAGTTGGTTATTGTCGAATAATATTTTTGTTAGAGCAAGGTAGGTTGATGATGAGCGGGTGCATCTTCTTTGTTTTCTCTCCTGAACGAAACGACGACTTTTCTCCCGACCTCCAAGCTCCGGTGAAGGATTTCAAGACTCTTCAACTTGACCCGAATTCTGATATTGCACCATTGGTTCTTCATCGCCTCTTTCCACCGCTGCTATTTCTGCGTTTTTTCTTTCATTTTCTATTCCAGGTGGCTGATTCACTTGAAATTTGA

Protein sequence

MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTLQLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI*
Homology
[Close]
BLAST of Csa5G637770 vs. TrEMBL
Match: A0A0A0KVP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G637770 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.0e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTL 60
           MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTL
Sbjct: 1   MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTL 60

Query: 61  QLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI 100
           QLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI
Sbjct: 61  QLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI 99

[Close]
BLAST of Csa5G637770 vs. NCBI nr
Match: gi|700197310|gb|KGN52487.1| (hypothetical protein Csa_5G637770 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.2e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTL 60
           MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTL
Sbjct: 1   MLSMLKLEVMIIKVGYCRIIFLLEQGRLMMSGCIFFVFSPERNDDFSPDLQAPVKDFKTL 60

Query: 61  QLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI 100
           QLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI
Sbjct: 61  QLDPNSDIAPLVLHRLFPPLLFLRFFFHFLFQVADSLEI 99

The following BLAST results are available for this feature:
BLAST of Csa5G637770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVP2_CUCSA5.0e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G637770 PE=4 SV=1[more]
BLAST of Csa5G637770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197310|gb|KGN52487.1|7.2e-49100.00hypothetical protein Csa_5G637770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102898cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G637770.1Csa5G637770.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU102898CU102898transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G637770Watermelon (97103) v1cuwmB368
Csa5G637770Watermelon (97103) v1cuwmB404
Csa5G637770Watermelon (97103) v1cuwmB426
Csa5G637770Cucurbita pepo (Zucchini)cpecuB044
Csa5G637770Cucurbita pepo (Zucchini)cpecuB175
Csa5G637770Cucurbita pepo (Zucchini)cpecuB415
Csa5G637770Cucurbita pepo (Zucchini)cpecuB621
Csa5G637770Bottle gourd (USVL1VR-Ls)culsiB356
Csa5G637770Bottle gourd (USVL1VR-Ls)culsiB345
Csa5G637770Bottle gourd (USVL1VR-Ls)culsiB371
Csa5G637770Cucumber (Gy14) v2cgybcuB000
Csa5G637770Cucumber (Gy14) v2cgybcuB130
Csa5G637770Cucumber (Gy14) v2cgybcuB223
Csa5G637770Cucumber (Gy14) v2cgybcuB226
Csa5G637770Melon (DHL92) v3.6.1cumedB337
Csa5G637770Melon (DHL92) v3.6.1cumedB373
Csa5G637770Melon (DHL92) v3.6.1cumedB362
Csa5G637770Melon (DHL92) v3.6.1cumedB381
Csa5G637770Silver-seed gourdcarcuB0109
Csa5G637770Silver-seed gourdcarcuB0293
Csa5G637770Silver-seed gourdcarcuB0470
Csa5G637770Silver-seed gourdcarcuB0708
Csa5G637770Watermelon (97103) v2cuwmbB349
Csa5G637770Watermelon (97103) v2cuwmbB378
Csa5G637770Watermelon (97103) v2cuwmbB385
Csa5G637770Wax gourdcuwgoB434
Csa5G637770Wax gourdcuwgoB470
Csa5G637770Wax gourdcuwgoB518
Csa5G637770Cucumber (Chinese Long) v2cucuB032
Csa5G637770Cucumber (Chinese Long) v2cucuB103
Csa5G637770Cucumber (Chinese Long) v2cucuB156
Csa5G637770Cucumber (Gy14) v1cgycuB143
Csa5G637770Cucumber (Gy14) v1cgycuB230
Csa5G637770Cucumber (Gy14) v1cgycuB411
Csa5G637770Cucumber (Gy14) v1cgycuB481
Csa5G637770Cucurbita maxima (Rimu)cmacuB266
Csa5G637770Cucurbita maxima (Rimu)cmacuB299
Csa5G637770Cucurbita maxima (Rimu)cmacuB421
Csa5G637770Cucurbita maxima (Rimu)cmacuB723
Csa5G637770Cucurbita maxima (Rimu)cmacuB740
Csa5G637770Cucurbita moschata (Rifu)cmocuB252
Csa5G637770Cucurbita moschata (Rifu)cmocuB287
Csa5G637770Cucurbita moschata (Rifu)cmocuB410
Csa5G637770Cucurbita moschata (Rifu)cmocuB714
Csa5G637770Cucurbita moschata (Rifu)cmocuB730
Csa5G637770Melon (DHL92) v3.5.1cumeB395
Csa5G637770Melon (DHL92) v3.5.1cumeB358
Csa5G637770Melon (DHL92) v3.5.1cumeB379
Csa5G637770Melon (DHL92) v3.5.1cumeB389
Csa5G637770Watermelon (Charleston Gray)cuwcgB343
Csa5G637770Watermelon (Charleston Gray)cuwcgB353
Csa5G637770Watermelon (Charleston Gray)cuwcgB389
Csa5G637770Watermelon (Charleston Gray)cuwcgB396