Csa5G626560 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G626560
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 25271458 .. 25271802 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCAATGTCGGGATGTTGAAGAAAAAACTTGGGATGACACATAGCAAACTTTCTTTAGTAAAAAGGGTATCGGCAAACTCGTTTTCCAAGAAGAATGCTAGTTCCAAAGTAAAGATACCAAAACTGTTGCCATTCAAAGGTTTGAGAGACAAAGGAAATCAAAAATTTCCTATGGGACACCAAAGGATACTTCAAGATCCAAGGGATCGACATGGAGGCACGGGCTTGCATTGCCACCATGTCCCTCATCAAACGCCAAATCATGGTGGCATACTTGAGCACAAGTTGGAATTGATTTATGCCATAATATTTGGTTTTGTTTGGTTTAATTTGTTTTAG

mRNA sequence

ATGGCCATCAATGTCGGGATGTTGAAGAAAAAACTTGGGATGACACATAGCAAACTTTCTTTAGTAAAAAGGGTATCGGCAAACTCGTTTTCCAAGAAGAATGCTAGTTCCAAAGTAAAGATACCAAAACTGTTGCCATTCAAAGGTTTGAGAGACAAAGGAAATCAAAAATTTCCTATGGGACACCAAAGGATACTTCAAGATCCAAGGGATCGACATGGAGGCACGGGCTTGCATTGCCACCATGTCCCTCATCAAACGCCAAATCATGGTGGCATACTTGAGCACAAGTTGGAATTGATTTATGCCATAATATTTGGTTTTGTTTGGTTTAATTTGTTTTAG

Coding sequence (CDS)

ATGGCCATCAATGTCGGGATGTTGAAGAAAAAACTTGGGATGACACATAGCAAACTTTCTTTAGTAAAAAGGGTATCGGCAAACTCGTTTTCCAAGAAGAATGCTAGTTCCAAAGTAAAGATACCAAAACTGTTGCCATTCAAAGGTTTGAGAGACAAAGGAAATCAAAAATTTCCTATGGGACACCAAAGGATACTTCAAGATCCAAGGGATCGACATGGAGGCACGGGCTTGCATTGCCACCATGTCCCTCATCAAACGCCAAATCATGGTGGCATACTTGAGCACAAGTTGGAATTGATTTATGCCATAATATTTGGTTTTGTTTGGTTTAATTTGTTTTAG

Protein sequence

MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPMGHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF*
Homology
[Close]
BLAST of Csa5G626560 vs. TrEMBL
Match: A0A0A0KV72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G626560 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPM 60
           MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPM
Sbjct: 1   MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPM 60

Query: 61  GHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF 115
           GHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF
Sbjct: 61  GHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF 114

[Close]
BLAST of Csa5G626560 vs. NCBI nr
Match: gi|700197170|gb|KGN52347.1| (hypothetical protein Csa_5G626560 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPM 60
           MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPM
Sbjct: 1   MAINVGMLKKKLGMTHSKLSLVKRVSANSFSKKNASSKVKIPKLLPFKGLRDKGNQKFPM 60

Query: 61  GHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF 115
           GHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF
Sbjct: 61  GHQRILQDPRDRHGGTGLHCHHVPHQTPNHGGILEHKLELIYAIIFGFVWFNLF 114

The following BLAST results are available for this feature:
BLAST of Csa5G626560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV72_CUCSA1.5e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G626560 PE=4 SV=1[more]
BLAST of Csa5G626560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197170|gb|KGN52347.1|2.1e-60100.00hypothetical protein Csa_5G626560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G626560.1Csa5G626560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G626560Cucumber (Gy14) v2cgybcuB223
Csa5G626560Cucumber (Gy14) v1cgycuB002