Csa5G626020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G626020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR007714 (Protein of unknown function DUF667)
LocationChr5 : 25231057 .. 25231855 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATTTTGTAACATGTTCATGTAAGCTCTTAAAAAAGAATCTAGTTTCTTCTTCTTTCTCCAGGCAGCCGACAACCCCCTCCCATATCACCTATTATCTCGTTCATTCCACCGCACGTTCCTCTCGCCGGAAGCGCTGAACGCCGTCGAAACCGAAGCCTAACCACAGCCGCGCTACTCAATTCGTCGTCCAGCTCACGCGCACTCGAGATCTGAAGTTGCGGGCTTCGAAATTTGTTGTTCTTCGTCCCTTCTCCGACGCCCAAACGGTATCCGCCGAGCACGCCACCGCCCGACTAACACTCACGCTACCTCGTGAAAATCGCTCGCGCTACGGTTGGATATGAAGTTGTAGCGGTCGGATCTCACCACTTGAACCCGAGTCTTGATAATACAAGACAAGACGCTTCTTATTGTGGCTACATTGCAACCTGCGGCGTGTAGCTGCTGACTGTCTTAAAATGTTCAAAAATACGTTTCAGTCCGGATTTCTGTCTATATTATTCAGCCTTGGGTATGTTTAGGTGTTTCGAAACCAGTGCTTACGGTCTGTCAAATGTTTTGCCTTTTAAATTCCTAGGATTAATGATCTGATCTGTTATTTAATATTTGTTTTTTTTATAGGAGCAAACCTCTCCAGATATGGGATAAAGAAGGTGAGTGTTTTCGTTATCGAGATGCGGTTTTTATTTTGCATTTGATTAAAGATTCTCTTGTCTGTTTGGTATTTGAGTACACGGCTATTAAGTTCTTGAATGGTCTGAAATTAGGGATTTTTCCGGGGTGGGGACAGTGA

mRNA sequence

ATGTTCAAAAATACGTTTCAGTCCGGATTTCTGTCTATATTATTCAGCCTTGGGAGCAAACCTCTCCAGATATGGGATAAAGAAGGTGAGTGTTTTCGTTATCGAGATGCGGTTTTTATTTTGCATTTGATTAAAGATTCTCTTGTCTGTTTGGTATTTGAGTACACGGCTATTAAGTTCTTGAATGGTCTGAAATTAGGGATTTTTCCGGGGTGGGGACAGTGA

Coding sequence (CDS)

ATGTTCAAAAATACGTTTCAGTCCGGATTTCTGTCTATATTATTCAGCCTTGGGAGCAAACCTCTCCAGATATGGGATAAAGAAGGTGAGTGTTTTCGTTATCGAGATGCGGTTTTTATTTTGCATTTGATTAAAGATTCTCTTGTCTGTTTGGTATTTGAGTACACGGCTATTAAGTTCTTGAATGGTCTGAAATTAGGGATTTTTCCGGGGTGGGGACAGTGA

Protein sequence

MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKFLNGLKLGIFPGWGQ*
Homology
[Close]
BLAST of Csa5G626020 vs. Swiss-Prot
Match: CFA20_BOVIN (Cilia- and flagella-associated protein 20 OS=Bos taurus GN=CFAP20 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-08
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE 29
          MFKNTFQSGFLSIL+S+GSKPLQIWDK+
Sbjct: 1  MFKNTFQSGFLSILYSIGSKPLQIWDKK 28

[Close]
BLAST of Csa5G626020 vs. Swiss-Prot
Match: CFA20_DANRE (Cilia- and flagella-associated protein 20 OS=Danio rerio GN=cfap20 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-08
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE 29
          MFKNTFQSGFLSIL+S+GSKPLQIWDK+
Sbjct: 1  MFKNTFQSGFLSILYSIGSKPLQIWDKK 28

[Close]
BLAST of Csa5G626020 vs. Swiss-Prot
Match: CFA20_HUMAN (Cilia- and flagella-associated protein 20 OS=Homo sapiens GN=CFAP20 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-08
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE 29
          MFKNTFQSGFLSIL+S+GSKPLQIWDK+
Sbjct: 1  MFKNTFQSGFLSILYSIGSKPLQIWDKK 28

[Close]
BLAST of Csa5G626020 vs. Swiss-Prot
Match: CFA20_MOUSE (Cilia- and flagella-associated protein 20 OS=Mus musculus GN=Cfap20 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-08
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE 29
          MFKNTFQSGFLSIL+S+GSKPLQIWDK+
Sbjct: 1  MFKNTFQSGFLSILYSIGSKPLQIWDKK 28

[Close]
BLAST of Csa5G626020 vs. Swiss-Prot
Match: CFA20_RAT (Cilia- and flagella-associated protein 20 OS=Rattus norvegicus GN=Cfap20 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-08
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE 29
          MFKNTFQSGFLSIL+S+GSKPLQIWDK+
Sbjct: 1  MFKNTFQSGFLSILYSIGSKPLQIWDKK 28

[Close]
BLAST of Csa5G626020 vs. TrEMBL
Match: A0A0A0KV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G626020 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKF 60
          MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKF
Sbjct: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKF 60

Query: 61 LNGLKLGIFPGWGQ 75
          LNGLKLGIFPGWGQ
Sbjct: 61 LNGLKLGIFPGWGQ 74

[Close]
BLAST of Csa5G626020 vs. TrEMBL
Match: A0A103Y1D6_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_021001 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1 

Query: 1   MFKNTFQSGFLSILFSLGSKPLQIWDKEGE 31
           MFKNTFQSGFLSIL+SLGSKPLQIWDKEG+
Sbjct: 94  MFKNTFQSGFLSILYSLGSKPLQIWDKEGQ 123

[Close]
BLAST of Csa5G626020 vs. TrEMBL
Match: M5WWV2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016200mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEG 30
          MFKNTFQSGFLSIL+SLGSKPLQIWDKEG
Sbjct: 1  MFKNTFQSGFLSILYSLGSKPLQIWDKEG 29

[Close]
BLAST of Csa5G626020 vs. TrEMBL
Match: A0A0D3AEA6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-07
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE---GECFRYRDAVFILHLIK 46
          MFKNTFQSGFLSIL+SLGSKPLQIWDKE   G   R RD     H+++
Sbjct: 1  MFKNTFQSGFLSILYSLGSKPLQIWDKEVEDGHVKRCRDDDIQSHVLE 48

[Close]
BLAST of Csa5G626020 vs. TrEMBL
Match: V4M1U2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021577mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGE 31
          MFKNTFQSGFLSIL+SLGSKPLQIWDKE E
Sbjct: 1  MFKNTFQSGFLSILYSLGSKPLQIWDKEVE 30

[Close]
BLAST of Csa5G626020 vs. TAIR10
Match: AT3G12300.1 (AT3G12300.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 8.9e-10
Identity = 27/28 (96.43%), Postives = 26/28 (92.86%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKE 29
          MFKNTFQSGFLSIL+SLGSKPLQIWDKE
Sbjct: 1  MFKNTFQSGFLSILYSLGSKPLQIWDKE 28

[Close]
BLAST of Csa5G626020 vs. NCBI nr
Match: gi|700197165|gb|KGN52342.1| (hypothetical protein Csa_5G626020 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKF 60
          MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKF
Sbjct: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYRDAVFILHLIKDSLVCLVFEYTAIKF 60

Query: 61 LNGLKLGIFPGWGQ 75
          LNGLKLGIFPGWGQ
Sbjct: 61 LNGLKLGIFPGWGQ 74

[Close]
BLAST of Csa5G626020 vs. NCBI nr
Match: gi|778706935|ref|XP_011655943.1| (PREDICTED: cilia- and flagella-associated protein 20 isoform X1 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYR 36
          MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYR
Sbjct: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYR 35

[Close]
BLAST of Csa5G626020 vs. NCBI nr
Match: gi|659092267|ref|XP_008446984.1| (PREDICTED: UPF0468 protein C16orf80 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGECFRYR 36
          MFKNTFQSGFLSILFSLGSKPLQIWDKEGE FRYR
Sbjct: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEGEYFRYR 35

[Close]
BLAST of Csa5G626020 vs. NCBI nr
Match: gi|976914615|gb|KVI00746.1| (hypothetical protein Ccrd_021001, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1 

Query: 1   MFKNTFQSGFLSILFSLGSKPLQIWDKEGE 31
           MFKNTFQSGFLSIL+SLGSKPLQIWDKEG+
Sbjct: 94  MFKNTFQSGFLSILYSLGSKPLQIWDKEGQ 123

[Close]
BLAST of Csa5G626020 vs. NCBI nr
Match: gi|595882636|ref|XP_007212634.1| (hypothetical protein PRUPE_ppa016200mg, partial [Prunus persica])

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1 

Query: 1  MFKNTFQSGFLSILFSLGSKPLQIWDKEG 30
          MFKNTFQSGFLSIL+SLGSKPLQIWDKEG
Sbjct: 1  MFKNTFQSGFLSILYSLGSKPLQIWDKEG 29

The following BLAST results are available for this feature:
BLAST of Csa5G626020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CFA20_BOVIN7.9e-0889.29Cilia- and flagella-associated protein 20 OS=Bos taurus GN=CFAP20 PE=2 SV=1[more]
CFA20_DANRE7.9e-0889.29Cilia- and flagella-associated protein 20 OS=Danio rerio GN=cfap20 PE=2 SV=1[more]
CFA20_HUMAN7.9e-0889.29Cilia- and flagella-associated protein 20 OS=Homo sapiens GN=CFAP20 PE=1 SV=1[more]
CFA20_MOUSE7.9e-0889.29Cilia- and flagella-associated protein 20 OS=Mus musculus GN=Cfap20 PE=1 SV=1[more]
CFA20_RAT7.9e-0889.29Cilia- and flagella-associated protein 20 OS=Rattus norvegicus GN=Cfap20 PE=2 SV... [more]
BLAST of Csa5G626020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV68_CUCSA1.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G626020 PE=4 SV=1[more]
A0A103Y1D6_CYNCS2.1e-0793.33Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
M5WWV2_PRUPE3.6e-0796.55Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016200mg PE=4 S... [more]
A0A0D3AEA6_BRAOL6.1e-0766.67Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
V4M1U2_EUTSA1.0e-0693.33Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021577mg PE=4 SV=1[more]
BLAST of Csa5G626020 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12300.18.9e-1096.43 unknown protein[more]
BLAST of Csa5G626020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197165|gb|KGN52342.1|1.5e-35100.00hypothetical protein Csa_5G626020 [Cucumis sativus][more]
gi|778706935|ref|XP_011655943.1|1.2e-11100.00PREDICTED: cilia- and flagella-associated protein 20 isoform X1 [Cucumis sativus... [more]
gi|659092267|ref|XP_008446984.1|2.2e-1097.14PREDICTED: UPF0468 protein C16orf80 homolog isoform X1 [Cucumis melo][more]
gi|976914615|gb|KVI00746.1|3.0e-0793.33hypothetical protein Ccrd_021001, partial [Cynara cardunculus var. scolymus][more]
gi|595882636|ref|XP_007212634.1|5.1e-0796.55hypothetical protein PRUPE_ppa016200mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007714CFA20/WDR90/C3orf67
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU138319cucumber EST collection version 3.0transcribed_cluster
CU166037cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G626020.1Csa5G626020.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU166037CU166037transcribed_cluster
CU138319CU138319transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007714Cilia/flagella-associated protein 20/WDR90/C3orf67PANTHERPTHR12458ORF PROTEINcoord: 2..30
score: 8.1
IPR007714Cilia/flagella-associated protein 20/WDR90/C3orf67PFAMPF05018DUF667coord: 1..31
score: 5.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G626020Cucurbita maxima (Rimu)cmacuB748
Csa5G626020Cucurbita moschata (Rifu)cmocuB406
Csa5G626020Cucurbita moschata (Rifu)cmocuB738
Csa5G626020Melon (DHL92) v3.5.1cumeB377
Csa5G626020Cucurbita pepo (Zucchini)cpecuB041
Csa5G626020Cucurbita pepo (Zucchini)cpecuB439
Csa5G626020Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G626020Cucumber (Gy14) v2cgybcuB223
Csa5G626020Melon (DHL92) v3.6.1cumedB359
Csa5G626020Silver-seed gourdcarcuB0742
Csa5G626020Silver-seed gourdcarcuB0857
Csa5G626020Cucumber (Gy14) v1cgycuB441
Csa5G626020Cucurbita maxima (Rimu)cmacuB417