Csa5G623600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G623600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 24909718 .. 24910899 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGATCTTTGAATTTGACCCAATTCTACATCTGCTTCAAACTTCCTCTGATCTGTATCATAGCATGACGATTATATGATCCATATCAGTTCTAAAAACTAACCAAAAACACAGTAGCTCTTCTTACAAAATCTCAATCGTGTTTACTATTTACTTTTCAAACTAATATGGTTTATACTTCAAACACGTATTACTAGCTTTAAACACCACTTGGTTGTTTGAAGTCGGTGAGTTCAAGTATCTTTACCCCTCAAATCAAGTAAACATCAATTTTAAACTTTAAAATTTGCAACTAAATTAATAAATTTAACCAAATTAATATATATAGTGATTCTAAAAAAATTACAAAAAGTAGAAAGATAACAGTGTCGGTTTATGTCTTATAGTTTATAATTATTATTATTGTTTTGTAATATTATATATTGATATTCAAAATGTATGTCTTATAGTTTATAATTAGAATTTATGGATAAAGTTATATCAATCAAAATTAAAACATAAATTTTAAAATCATATGAATACTTTTTAAGTTTTATCCAAATCATTGGAACCAAAATTAGAATTTAACCTAATTTAATTTATAAAACATTACATAATACATATTTTAAGTTAAAAATGATTGAATTGGATTTATAAACTAACATACAATATTTGTAAATATTTAATCTTCACGAGCTTCAATTCACGCCGCCTCACAACATCTCTGCGACACCGATTCTCCCTCTCGTCTTGGCTTCTTATCCCACACAGTCGCCGGCGTTACCCTCTCCCTCTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATGTTAGTGATAATTTATTTTGAGCATTTTTTCTACATTTAGAAGTTACTAGTTTTTGTGTTGATGCTGAGTAGTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATGTTAGTGATAATTTATTTTGAGCATTTTTTCTACATTTAGAAGTTACTCGGTTTGCTGTTGATGCTTAGTATTCAAGAACAGTGATTCTTTCTTCATCTTCTCCTTGTTTCCGCAGCCCATTTTTTGACACGCTGCATCCTTTGA

mRNA sequence

ATGAGTAGATCTTTGAATTTGACCCAATTCTACATCTGCTTCAAACTTCCTCTGATCTCTTCAATTCACGCCGCCTCACAACATCTCTGCGACACCGATTCTCCCTCTCGTCTTGGCTTCTTATCCCACACAGTCGCCGGCGTTACCCTCTCCCTCTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATCCCATTTTTTGACACGCTGCATCCTTTGA

Coding sequence (CDS)

ATGAGTAGATCTTTGAATTTGACCCAATTCTACATCTGCTTCAAACTTCCTCTGATCTCTTCAATTCACGCCGCCTCACAACATCTCTGCGACACCGATTCTCCCTCTCGTCTTGGCTTCTTATCCCACACAGTCGCCGGCGTTACCCTCTCCCTCTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATCCCATTTTTTGACACGCTGCATCCTTTGA

Protein sequence

MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL*
Homology
[Close]
BLAST of Csa5G623600 vs. TrEMBL
Match: A0A0A0KWV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623600 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60
          MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG
Sbjct: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60

Query: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 93
          VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL
Sbjct: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 92

[Close]
BLAST of Csa5G623600 vs. TrEMBL
Match: E5GCK6_CUCME (Aquarius OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 85
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1808 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1858

[Close]
BLAST of Csa5G623600 vs. NCBI nr
Match: gi|700197119|gb|KGN52296.1| (hypothetical protein Csa_5G623600 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 9.4e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60
          MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG
Sbjct: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60

Query: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 93
          VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL
Sbjct: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 92

[Close]
BLAST of Csa5G623600 vs. NCBI nr
Match: gi|307136393|gb|ADN34203.1| (aquarius [Cucumis melo subsp. melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 85
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1808 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1858

The following BLAST results are available for this feature:
BLAST of Csa5G623600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV6_CUCSA6.5e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623600 PE=4 SV=1[more]
E5GCK6_CUCME1.1e-1082.35Aquarius OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Csa5G623600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197119|gb|KGN52296.1|9.4e-43100.00hypothetical protein Csa_5G623600 [Cucumis sativus][more]
gi|307136393|gb|ADN34203.1|1.6e-1082.35aquarius [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU098672cucumber EST collection version 3.0transcribed_cluster
CU154514cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G623600.1Csa5G623600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU098672CU098672transcribed_cluster
CU154514CU154514transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G623600Silver-seed gourdcarcuB0515
Csa5G623600Silver-seed gourdcarcuB0857
Csa5G623600Watermelon (97103) v2cuwmbB383
Csa5G623600Wax gourdcuwgoB501
Csa5G623600Cucumber (Gy14) v1cgycuB441
Csa5G623600Cucurbita maxima (Rimu)cmacuB417
Csa5G623600Cucurbita maxima (Rimu)cmacuB748
Csa5G623600Cucurbita moschata (Rifu)cmocuB406
Csa5G623600Cucurbita moschata (Rifu)cmocuB738
Csa5G623600Melon (DHL92) v3.5.1cumeB377
Csa5G623600Watermelon (Charleston Gray)cuwcgB394
Csa5G623600Watermelon (97103) v1cuwmB401
Csa5G623600Cucurbita pepo (Zucchini)cpecuB041
Csa5G623600Cucurbita pepo (Zucchini)cpecuB439
Csa5G623600Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G623600Cucumber (Gy14) v2cgybcuB223
Csa5G623600Melon (DHL92) v3.6.1cumedB359