Csa5G611660 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G611660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 23921062 .. 23921398 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATTGCAAAAATGGAAACAAACCGGTTCAGTACCATAAACCGTCCTAAGAATTTGCAAAATGGCGCCGATAACATGACCCATCGCCCCAGACGTAACTCCCACCCTTTTTCCCGCGCGTGTACTCTACTCGCCTCCCATCAATTCACGACTGTCGGAGTTCTTTTTCACTGCTCTACCTCCGGCGACTGCATATTCTTCCTTTTTCTATCAGATCTCTCTCTCTCTCTCTCTTTCTCTTTTCAAATTTTCCACCGGTCGTTTTCACTAATCTGTTGAATCAATTAATTTCTCTTAGAAGAATCGTACCTTTGTTTATTATTATTTTTATTCT

mRNA sequence

ATGGTAATTGCAAAAATGGAAACAAACCGGTTCAGTACCATAAACCGTCCTAAGAATTTGCAAAATGGCGCCGATAACATGACCCATCGCCCCAGACGTAACTCCCACCCTTTTTCCCGCGCGTGTACTCTACTCGCCTCCCATCAATTCACGACTGTCGGAGTTCTTTTTCACTGCTCTACCTCCGGCGACTGCATATTCTTCCTTTTTCTATCAGATCTCTCTCTCTCTCTCTCTTTCTCTTTTCAAATTTTCCACCGGTCGTTTTCACTAATCTGTTGA

Coding sequence (CDS)

ATGGTAATTGCAAAAATGGAAACAAACCGGTTCAGTACCATAAACCGTCCTAAGAATTTGCAAAATGGCGCCGATAACATGACCCATCGCCCCAGACGTAACTCCCACCCTTTTTCCCGCGCGTGTACTCTACTCGCCTCCCATCAATTCACGACTGTCGGAGTTCTTTTTCACTGCTCTACCTCCGGCGACTGCATATTCTTCCTTTTTCTATCAGATCTCTCTCTCTCTCTCTCTTTCTCTTTTCAAATTTTCCACCGGTCGTTTTCACTAATCTGTTGA

Protein sequence

MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCSTSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC*
Homology
[Close]
BLAST of Csa5G611660 vs. TrEMBL
Match: A0A0A0KR87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611660 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCS 60
          MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCS
Sbjct: 1  MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCS 60

Query: 61 TSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC 94
          TSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC
Sbjct: 61 TSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC 93

[Close]
BLAST of Csa5G611660 vs. NCBI nr
Match: gi|700196958|gb|KGN52135.1| (hypothetical protein Csa_5G611660 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCS 60
          MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCS
Sbjct: 1  MVIAKMETNRFSTINRPKNLQNGADNMTHRPRRNSHPFSRACTLLASHQFTTVGVLFHCS 60

Query: 61 TSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC 94
          TSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC
Sbjct: 61 TSGDCIFFLFLSDLSLSLSFSFQIFHRSFSLIC 93

The following BLAST results are available for this feature:
BLAST of Csa5G611660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR87_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611660 PE=4 SV=1[more]
BLAST of Csa5G611660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196958|gb|KGN52135.1|1.8e-46100.00hypothetical protein Csa_5G611660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G611660.1Csa5G611660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G611660Cucurbita maxima (Rimu)cmacuB295
Csa5G611660Cucurbita maxima (Rimu)cmacuB417
Csa5G611660Cucurbita maxima (Rimu)cmacuB735
Csa5G611660Cucurbita maxima (Rimu)cmacuB748
Csa5G611660Cucurbita moschata (Rifu)cmocuB282
Csa5G611660Cucurbita moschata (Rifu)cmocuB406
Csa5G611660Cucurbita moschata (Rifu)cmocuB738
Csa5G611660Cucurbita moschata (Rifu)cmocuB724
Csa5G611660Melon (DHL92) v3.5.1cumeB377
Csa5G611660Melon (DHL92) v3.5.1cumeB367
Csa5G611660Watermelon (Charleston Gray)cuwcgB369
Csa5G611660Watermelon (Charleston Gray)cuwcgB394
Csa5G611660Watermelon (97103) v1cuwmB401
Csa5G611660Watermelon (97103) v1cuwmB414
Csa5G611660Cucurbita pepo (Zucchini)cpecuB041
Csa5G611660Cucurbita pepo (Zucchini)cpecuB190
Csa5G611660Cucurbita pepo (Zucchini)cpecuB439
Csa5G611660Bottle gourd (USVL1VR-Ls)culsiB328
Csa5G611660Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G611660Cucumber (Gy14) v2cgybcuB223
Csa5G611660Cucumber (Gy14) v2cgybcuB233
Csa5G611660Melon (DHL92) v3.6.1cumedB345
Csa5G611660Melon (DHL92) v3.6.1cumedB359
Csa5G611660Silver-seed gourdcarcuB0857
Csa5G611660Silver-seed gourdcarcuB1066
Csa5G611660Watermelon (97103) v2cuwmbB341
Csa5G611660Watermelon (97103) v2cuwmbB383
Csa5G611660Wax gourdcuwgoB447
Csa5G611660Wax gourdcuwgoB501
Csa5G611660Wax gourdcuwgoB512
Csa5G611660Cucumber (Chinese Long) v2cucuB160
Csa5G611660Cucumber (Gy14) v1cgycuB399
Csa5G611660Cucumber (Gy14) v1cgycuB410