Csa5G608490 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G608490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 23482923 .. 23483725 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGAGGCTGCAGTAGAACGATTATGGGTACCGAAGTTCTTTTGGGGGGCAACAATTGTGATGGCTGGGGCATGTTCACCAACAGTTCTTATAGCGTGTTGGCCATGGTGGCTGCTCAATAGATGCGACAATGGTATTAATTATGTTTGAGGTAAGACTTTCTTTTTTTTAGTTCTCTAAACTTTTATAGCGTCTAAAGATGCAATAAGAGTTTAAAAGTAACGATGAGTTGAAGTCAGACAAGCAACATGACATGTTTCTCTTGTGCTTGAACTTTAAGCACACATTAATGATGGAGCTTTCCAATGGGGGGTGGCAGTAGGCCATTACAACTCACCAATCCGAGAATACACACCACTGCACGGTAAGTCAGACTTTGCTTTTCGGACAAAGCGCATTCAAAGTGAGCAATTTCAAAAAGTCATAAGTGGGACTGGAAAAGCATTGCATTCTAGAACTGTAGGCTTCACTTTATTATGTACATCTTTTCACACCATCTTTTTTATCTTAGCATTATTAATTAGTGTATGTATATTTTTTTCTGCTATCGTAATTTGAATACAGCATATACTAAAACATGAGAATCCCACCTTTTATACATTCCTACAAAAATAAAGGAGAAAAAGTAGAGAAGTCCTTGCTCTAGCTAATTGTGCTTGAATCAATGTAATGTCAAAACATGTGGCACTCAGCCAATTGCCCACTTGGCAGGAAAAGAAAGGGTAATATCCCCCCAGTCCCTCAACTTGATAGAATACCTGTCCACGTCATACCACGAGACATCTTTTCATCATCTATATAA

mRNA sequence

ATGGCTGGGGCATGTTCACCAACAGTTCTTATAGCGTGTTGGCCATGGTGGCTGCTCAATAGATGCGACAATGCACACATTAATGATGGAGCTTTCCAATGGGGGGTGGCAGTAGGCCATTACAACTCACCAATCCGAGAATACACACCACTGCACGCCAATTGCCCACTTGGCAGGAAAAGAAAGGGTAATATCCCCCCAGTCCCTCAACTTGATAGAATACCTGTCCACGTCATACCACGAGACATCTTTTCATCATCTATATAA

Coding sequence (CDS)

ATGGCTGGGGCATGTTCACCAACAGTTCTTATAGCGTGTTGGCCATGGTGGCTGCTCAATAGATGCGACAATGCACACATTAATGATGGAGCTTTCCAATGGGGGGTGGCAGTAGGCCATTACAACTCACCAATCCGAGAATACACACCACTGCACGCCAATTGCCCACTTGGCAGGAAAAGAAAGGGTAATATCCCCCCAGTCCCTCAACTTGATAGAATACCTGTCCACGTCATACCACGAGACATCTTTTCATCATCTATATAA

Protein sequence

MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRKRKGNIPPVPQLDRIPVHVIPRDIFSSSI*
Homology
[Close]
BLAST of Csa5G608490 vs. TrEMBL
Match: A0A0A0KWE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608490 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.9e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60
          MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK
Sbjct: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60

Query: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 89
          RKGNIPPVPQLDRIPVHVIPRDIFSSSI
Sbjct: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 88

[Close]
BLAST of Csa5G608490 vs. NCBI nr
Match: gi|700196884|gb|KGN52061.1| (hypothetical protein Csa_5G608490 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 7.1e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60
          MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK
Sbjct: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60

Query: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 89
          RKGNIPPVPQLDRIPVHVIPRDIFSSSI
Sbjct: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 88

The following BLAST results are available for this feature:
BLAST of Csa5G608490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE1_CUCSA4.9e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608490 PE=4 SV=1[more]
BLAST of Csa5G608490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196884|gb|KGN52061.1|7.1e-48100.00hypothetical protein Csa_5G608490 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G608490.1Csa5G608490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G608490Lsi04G002760Bottle gourd (USVL1VR-Ls)culsiB368
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G608490Silver-seed gourdcarcuB0496
Csa5G608490Silver-seed gourdcarcuB0626
Csa5G608490Silver-seed gourdcarcuB0857
Csa5G608490Silver-seed gourdcarcuB0862
Csa5G608490Silver-seed gourdcarcuB1057
Csa5G608490Watermelon (97103) v2cuwmbB377
Csa5G608490Watermelon (97103) v2cuwmbB383
Csa5G608490Watermelon (97103) v2cuwmbB390
Csa5G608490Watermelon (97103) v2cuwmbB401
Csa5G608490Wax gourdcuwgoB482
Csa5G608490Wax gourdcuwgoB495
Csa5G608490Wax gourdcuwgoB512
Csa5G608490Cucumber (Chinese Long) v2cucuB031
Csa5G608490Cucumber (Chinese Long) v2cucuB030
Csa5G608490Cucumber (Gy14) v1cgycuB304
Csa5G608490Cucumber (Gy14) v1cgycuB410
Csa5G608490Cucurbita maxima (Rimu)cmacuB135
Csa5G608490Cucurbita maxima (Rimu)cmacuB417
Csa5G608490Cucurbita maxima (Rimu)cmacuB730
Csa5G608490Cucurbita maxima (Rimu)cmacuB764
Csa5G608490Cucurbita moschata (Rifu)cmocuB406
Csa5G608490Cucurbita moschata (Rifu)cmocuB721
Csa5G608490Cucurbita moschata (Rifu)cmocuB755
Csa5G608490Melon (DHL92) v3.5.1cumeB377
Csa5G608490Melon (DHL92) v3.5.1cumeB392
Csa5G608490Watermelon (Charleston Gray)cuwcgB376
Csa5G608490Watermelon (Charleston Gray)cuwcgB394
Csa5G608490Watermelon (Charleston Gray)cuwcgB400
Csa5G608490Watermelon (Charleston Gray)cuwcgB412
Csa5G608490Watermelon (97103) v1cuwmB377
Csa5G608490Watermelon (97103) v1cuwmB401
Csa5G608490Watermelon (97103) v1cuwmB425
Csa5G608490Watermelon (97103) v1cuwmB441
Csa5G608490Cucurbita pepo (Zucchini)cpecuB041
Csa5G608490Cucurbita pepo (Zucchini)cpecuB422
Csa5G608490Cucurbita pepo (Zucchini)cpecuB434
Csa5G608490Cucurbita pepo (Zucchini)cpecuB682
Csa5G608490Bottle gourd (USVL1VR-Ls)culsiB346
Csa5G608490Bottle gourd (USVL1VR-Ls)culsiB383
Csa5G608490Cucumber (Gy14) v2cgybcuB033
Csa5G608490Cucumber (Gy14) v2cgybcuB223
Csa5G608490Melon (DHL92) v3.6.1cumedB335
Csa5G608490Melon (DHL92) v3.6.1cumedB359
Csa5G608490Melon (DHL92) v3.6.1cumedB375
Csa5G608490Melon (DHL92) v3.6.1cumedB379