Csa5G606900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G606900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 23098164 .. 23099581 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCAGGTGTCCCGCCATTCGATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTGTTCGAATCGCAAAGCCCATAGCCAGAGAGTGGGTCGGCATCTAACCAGGGTTAGTTATTTTAACCACGCTTCTCTCTCTCACTCTAGTTAAAGAAAGAACGTTCCCAGAAGCCGAATTTCCCAAGAGGCAATCAAACATAAACTCAATTAACACAGCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCACGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGGTGAATCCGATTCCTTTTTTTTTTGCTGGGATCTTGAAAGATCTATTAAATTCCGGTGAGTTTTTCTTTTCTGATTTCGTAATTCTTACCGTGTGATGGTTATGTGAGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTAACGAGCATGTGTTCAATGAATGATTCTTTTTCTTTACTTGTTTCTCATTGTTGAATTTCATTTCTCTGATCAGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGGTTAGAGAAGAGATCCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCTTTCTCTATCTCTGGAAGAGTCTATTTTTGAAAATTATTTGCTCCGGAGCCTTTGAAGTTTTTACTTAAATAGCGAACACTCTTCGCCTTTTTCTCTTTTTGTTAAAGTCTGGACGGCGTGTTAGCTAATCGAAGAATGGGGAGTTCATTCTACCGGAATTCTGCAAATATAGATATTATGGTCTTTTGATAAATTTTGGTTTCTTATGGGAAAGGACCGTAAATAGTGCATCAGTTTGTGTTATTGGTGTATGAATTCTTTTTTTTTTTTTGTCAAATCACTTCCCAGCTCGTGGCTTGGGGGTTCTTATTGTCGAGTCTAGATAAATTCACCTTTTTTTTTTTTTTTTTTTTGGTAGTGATCCATTGGAAGTTAATTCTGTATCAATATTCTTGCTCTTGTGGTCAAGTGTTGATTTTTATGTCCTTGTGTTATTTCCGCAGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAG

mRNA sequence

ATGACACCAGGTGTCCCGCCATTCGATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCACGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAG

Coding sequence (CDS)

ATGACACCAGGTGTCCCGCCATTCGATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCACGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAG

Protein sequence

MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKGLKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVVLSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGEMDL*
Homology
[Close]
BLAST of Csa5G606900 vs. TrEMBL
Match: A0A0A0KQY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606900 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.2e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60
           MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG
Sbjct: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60

Query: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV 120
           LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV
Sbjct: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV 120

Query: 121 LSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGE 180
           LSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGE
Sbjct: 121 LSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGE 180

Query: 181 MDL 184
           MDL
Sbjct: 181 MDL 183

[Close]
BLAST of Csa5G606900 vs. NCBI nr
Match: gi|700196823|gb|KGN52000.1| (hypothetical protein Csa_5G606900 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 4.6e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60
           MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG
Sbjct: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60

Query: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV 120
           LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV
Sbjct: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV 120

Query: 121 LSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGE 180
           LSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGE
Sbjct: 121 LSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESGE 180

Query: 181 MDL 184
           MDL
Sbjct: 181 MDL 183

The following BLAST results are available for this feature:
BLAST of Csa5G606900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQY6_CUCSA3.2e-102100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606900 PE=4 SV=1[more]
BLAST of Csa5G606900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196823|gb|KGN52000.1|4.6e-102100.00hypothetical protein Csa_5G606900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU096778cucumber EST collection version 3.0transcribed_cluster
CU134939cucumber EST collection version 3.0transcribed_cluster
CU156883cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G606900.1Csa5G606900.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU134939CU134939transcribed_cluster
CU156883CU156883transcribed_cluster
CU096778CU096778transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G606900CSPI05G24510Wild cucumber (PI 183967)cpicuB239
Csa5G606900CsGy5G024000Cucumber (Gy14) v2cgybcuB223
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G606900Silver-seed gourdcarcuB0108
Csa5G606900Silver-seed gourdcarcuB0496
Csa5G606900Silver-seed gourdcarcuB0626
Csa5G606900Silver-seed gourdcarcuB0857
Csa5G606900Watermelon (97103) v2cuwmbB383
Csa5G606900Watermelon (97103) v2cuwmbB390
Csa5G606900Watermelon (97103) v2cuwmbB402
Csa5G606900Wax gourdcuwgoB474
Csa5G606900Wax gourdcuwgoB512
Csa5G606900Wax gourdcuwgoB526
Csa5G606900Cucumber (Gy14) v1cgycuB410
Csa5G606900Cucurbita maxima (Rimu)cmacuB136
Csa5G606900Cucurbita maxima (Rimu)cmacuB417
Csa5G606900Cucurbita maxima (Rimu)cmacuB751
Csa5G606900Cucurbita moschata (Rifu)cmocuB122
Csa5G606900Cucurbita moschata (Rifu)cmocuB406
Csa5G606900Cucurbita moschata (Rifu)cmocuB741
Csa5G606900Melon (DHL92) v3.5.1cumeB377
Csa5G606900Melon (DHL92) v3.5.1cumeB366
Csa5G606900Melon (DHL92) v3.5.1cumeB392
Csa5G606900Watermelon (Charleston Gray)cuwcgB355
Csa5G606900Watermelon (Charleston Gray)cuwcgB394
Csa5G606900Watermelon (Charleston Gray)cuwcgB400
Csa5G606900Watermelon (97103) v1cuwmB378
Csa5G606900Watermelon (97103) v1cuwmB401
Csa5G606900Watermelon (97103) v1cuwmB439
Csa5G606900Watermelon (97103) v1cuwmB441
Csa5G606900Cucurbita pepo (Zucchini)cpecuB041
Csa5G606900Cucurbita pepo (Zucchini)cpecuB442
Csa5G606900Cucurbita pepo (Zucchini)cpecuB680
Csa5G606900Bottle gourd (USVL1VR-Ls)culsiB359
Csa5G606900Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G606900Bottle gourd (USVL1VR-Ls)culsiB383
Csa5G606900Bottle gourd (USVL1VR-Ls)culsiB390
Csa5G606900Melon (DHL92) v3.6.1cumedB342
Csa5G606900Melon (DHL92) v3.6.1cumedB359
Csa5G606900Melon (DHL92) v3.6.1cumedB375