Csa5G602140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G602140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 22075767 .. 22076072 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGACGGGCCGAGGAGCGTAGGGTTAGGTTGGGCCTCATAGGCCCTTACTCACCAGTGAGTTGGGCTGGGCCTTGGAGGCTCAACATCTCAACTCTCCAATCTATCGGCTATCTTGCCTCGATCGGTGACTCGATCGGCGGAGAAAGACGGGCGTCCATTTCAATTTTTATCTCCTCTGTTCTTTACAATTTCCGTCGACCACGAGCCGCTAAACAGCTTTTCCCGCTCTTTCGTGACTTCATTGGCGTTCTTTATTATCGTTCTTGCTGTGAAATATCATCTCGAAATTGGAGAACATAG

mRNA sequence

ATGAATCGACGGGCCGAGGAGCGTAGGGTTAGGTTGGGCCTCATAGGCCCTTACTCACCAGTGAGTTGGGCTGGGCCTTGGAGGCTCAACATCTCAACTCTCCAATCTATCGGCTATCTTGCCTCGATCGGTGACTCGATCGGCGGAGAAAGACGGGCGTCCATTTCAATTTTTATCTCCTCTGTTCTTTACAATTTCCGTCGACCACGAGCCGCTAAACAGCTTTTCCCGCTCTTTCGTGACTTCATTGGCGTTCTTTATTATCGTTCTTGCTGTGAAATATCATCTCGAAATTGGAGAACATAG

Coding sequence (CDS)

ATGAATCGACGGGCCGAGGAGCGTAGGGTTAGGTTGGGCCTCATAGGCCCTTACTCACCAGTGAGTTGGGCTGGGCCTTGGAGGCTCAACATCTCAACTCTCCAATCTATCGGCTATCTTGCCTCGATCGGTGACTCGATCGGCGGAGAAAGACGGGCGTCCATTTCAATTTTTATCTCCTCTGTTCTTTACAATTTCCGTCGACCACGAGCCGCTAAACAGCTTTTCCCGCTCTTTCGTGACTTCATTGGCGTTCTTTATTATCGTTCTTGCTGTGAAATATCATCTCGAAATTGGAGAACATAG

Protein sequence

MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFISSVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT*
Homology
[Close]
BLAST of Csa5G602140 vs. TrEMBL
Match: A0A0A0KQ88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602140 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.5e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFIS 60
           MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFIS
Sbjct: 1   MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFIS 60

Query: 61  SVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT 102
           SVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT
Sbjct: 61  SVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT 101

[Close]
BLAST of Csa5G602140 vs. NCBI nr
Match: gi|700196638|gb|KGN51815.1| (hypothetical protein Csa_5G602140 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 7.8e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFIS 60
           MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFIS
Sbjct: 1   MNRRAEERRVRLGLIGPYSPVSWAGPWRLNISTLQSIGYLASIGDSIGGERRASISIFIS 60

Query: 61  SVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT 102
           SVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT
Sbjct: 61  SVLYNFRRPRAAKQLFPLFRDFIGVLYYRSCCEISSRNWRT 101

The following BLAST results are available for this feature:
BLAST of Csa5G602140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ88_CUCSA5.5e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602140 PE=4 SV=1[more]
BLAST of Csa5G602140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196638|gb|KGN51815.1|7.8e-51100.00hypothetical protein Csa_5G602140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000244 spliceosomal tri-snRNP complex assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106023cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G602140.1Csa5G602140.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU106023CU106023transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G602140CSPI05G22780Wild cucumber (PI 183967)cpicuB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G602140Cucurbita maxima (Rimu)cmacuB413
Csa5G602140Cucurbita maxima (Rimu)cmacuB749
Csa5G602140Cucurbita maxima (Rimu)cmacuB803
Csa5G602140Cucurbita moschata (Rifu)cmocuB402
Csa5G602140Cucurbita moschata (Rifu)cmocuB739
Csa5G602140Cucurbita moschata (Rifu)cmocuB793
Csa5G602140Melon (DHL92) v3.5.1cumeB377
Csa5G602140Melon (DHL92) v3.5.1cumeB386
Csa5G602140Melon (DHL92) v3.5.1cumeB400
Csa5G602140Watermelon (Charleston Gray)cuwcgB350
Csa5G602140Watermelon (Charleston Gray)cuwcgB378
Csa5G602140Watermelon (Charleston Gray)cuwcgB394
Csa5G602140Watermelon (97103) v1cuwmB374
Csa5G602140Watermelon (97103) v1cuwmB401
Csa5G602140Cucurbita pepo (Zucchini)cpecuB047
Csa5G602140Cucurbita pepo (Zucchini)cpecuB118
Csa5G602140Cucurbita pepo (Zucchini)cpecuB440
Csa5G602140Bottle gourd (USVL1VR-Ls)culsiB349
Csa5G602140Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G602140Cucumber (Gy14) v2cgybcuB038
Csa5G602140Cucumber (Gy14) v2cgybcuB135
Csa5G602140Cucumber (Gy14) v2cgybcuB223
Csa5G602140Melon (DHL92) v3.6.1cumedB359
Csa5G602140Melon (DHL92) v3.6.1cumedB370
Csa5G602140Melon (DHL92) v3.6.1cumedB385
Csa5G602140Silver-seed gourdcarcuB0271
Csa5G602140Silver-seed gourdcarcuB0530
Csa5G602140Silver-seed gourdcarcuB0648
Csa5G602140Silver-seed gourdcarcuB0743
Csa5G602140Watermelon (97103) v2cuwmbB383
Csa5G602140Wax gourdcuwgoB497
Csa5G602140Wax gourdcuwgoB503
Csa5G602140Wax gourdcuwgoB512
Csa5G602140Cucumber (Chinese Long) v2cucuB033
Csa5G602140Cucumber (Chinese Long) v2cucuB108
Csa5G602140Cucumber (Gy14) v1cgycuB108
Csa5G602140Cucumber (Gy14) v1cgycuB410
Csa5G602140Cucumber (Gy14) v1cgycuB483