Csa5G598790 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G598790
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLysM type receptor kinase
LocationChr5 : 21850051 .. 21850215 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAGATAGCGGCGTGGTGTTTGAATGAAAATCCGGTGGGGAGACCGGAGATGCGTGAAATTGTTGCTTTGCTGTCGCAGCTTATGACCTCCGCCGTCGAATGGGAAGCCTCACTCGGCGGTAACAGCCAGGTTTTCAGTGGCCTCTTCACCGGAAGATGA

mRNA sequence

ATGGGAGAGATAGCGGCGTGGTGTTTGAATGAAAATCCGGTGGGGAGACCGGAGATGCGTGAAATTGTTGCTTTGCTGTCGCAGCTTATGACCTCCGCCGTCGAATGGGAAGCCTCACTCGGCGGTAACAGCCAGGTTTTCAGTGGCCTCTTCACCGGAAGATGA

Coding sequence (CDS)

ATGGGAGAGATAGCGGCGTGGTGTTTGAATGAAAATCCGGTGGGGAGACCGGAGATGCGTGAAATTGTTGCTTTGCTGTCGCAGCTTATGACCTCCGCCGTCGAATGGGAAGCCTCACTCGGCGGTAACAGCCAGGTTTTCAGTGGCCTCTTCACCGGAAGATGA

Protein sequence

MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR*
Homology
[Close]
BLAST of Csa5G598790 vs. Swiss-Prot
Match: LYK3_ARATH (LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-10
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 4   IAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           +A  C++++P+ RP M+++V  LSQ++ S++EWEA+L GNSQVFSGL  GR
Sbjct: 601 LAKQCVDDDPILRPNMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 651

[Close]
BLAST of Csa5G598790 vs. TrEMBL
Match: A0A0A0KVJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598790 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
          MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR
Sbjct: 1  MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 54

[Close]
BLAST of Csa5G598790 vs. TrEMBL
Match: M5XHD0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019853mg PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.4e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           M EIA WCL+E  V RPEMREIV +LSQ+M S++EWEASLGGNSQVFSG+F GR
Sbjct: 509 MAEIAEWCLSEEAVERPEMREIVVMLSQIMVSSIEWEASLGGNSQVFSGVFNGR 562

[Close]
BLAST of Csa5G598790 vs. TrEMBL
Match: B9SPJ3_RICCO (Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0024500 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.4e-15
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           M EIA WCLNE+P+ RPEMR+IV  LS++MTS+VEWEASLGGNS VFSG++ GR
Sbjct: 570 MAEIAEWCLNEDPINRPEMRDIVPNLSKIMTSSVEWEASLGGNSTVFSGIYNGR 623

[Close]
BLAST of Csa5G598790 vs. TrEMBL
Match: A0A067GU95_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044997mg PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           M  +A WCLNE+ V RPEMR+IVA+LSQ+M ++ EWEASLGG+SQVFSGLF GR
Sbjct: 510 MAAVAEWCLNEDAVDRPEMRDIVAILSQIMITSTEWEASLGGDSQVFSGLFNGR 563

[Close]
BLAST of Csa5G598790 vs. TrEMBL
Match: V4TDX4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033617mg PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           M  +A WCLNE+ V RPEMR+IVA+LSQ+M ++ EWEASLGG+SQVFSGLF GR
Sbjct: 503 MAAVAEWCLNEDAVDRPEMRDIVAILSQIMITSTEWEASLGGDSQVFSGLFNGR 556

[Close]
BLAST of Csa5G598790 vs. TAIR10
Match: AT1G51940.1 (AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-11
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 4   IAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           +A  C++++P+ RP M+++V  LSQ++ S++EWEA+L GNSQVFSGL  GR
Sbjct: 601 LAKQCVDDDPILRPNMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 651

[Close]
BLAST of Csa5G598790 vs. NCBI nr
Match: gi|778708647|ref|XP_011656254.1| (PREDICTED: lysM domain receptor-like kinase 3 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR
Sbjct: 577 MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 630

[Close]
BLAST of Csa5G598790 vs. NCBI nr
Match: gi|700196594|gb|KGN51771.1| (hypothetical protein Csa_5G598790 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
          MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR
Sbjct: 1  MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 54

[Close]
BLAST of Csa5G598790 vs. NCBI nr
Match: gi|659092312|ref|XP_008447006.1| (PREDICTED: lysM domain receptor-like kinase 3 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR
Sbjct: 576 MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 629

[Close]
BLAST of Csa5G598790 vs. NCBI nr
Match: gi|645230546|ref|XP_008221984.1| (PREDICTED: lysM domain receptor-like kinase 3 [Prunus mume])

HSP 1 Score: 87.8 bits (216), Expect = 6.4e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           M EIA WCL+E  V RPEMREIV +LSQ+M S++EWEASLGGNSQVFSG+F GR
Sbjct: 522 MAEIAEWCLSEEAVERPEMREIVVMLSQIMVSSIEWEASLGGNSQVFSGVFNGR 575

[Close]
BLAST of Csa5G598790 vs. NCBI nr
Match: gi|596232251|ref|XP_007224308.1| (hypothetical protein PRUPE_ppa019853mg [Prunus persica])

HSP 1 Score: 87.8 bits (216), Expect = 6.4e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 1   MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 55
           M EIA WCL+E  V RPEMREIV +LSQ+M S++EWEASLGGNSQVFSG+F GR
Sbjct: 509 MAEIAEWCLSEEAVERPEMREIVVMLSQIMVSSIEWEASLGGNSQVFSGVFNGR 562

The following BLAST results are available for this feature:
BLAST of Csa5G598790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LYK3_ARATH3.6e-1052.94LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1[more]
BLAST of Csa5G598790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVJ0_CUCSA2.2e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598790 PE=4 SV=1[more]
M5XHD0_PRUPE4.4e-1574.07Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019853mg PE=3 SV=1[more]
B9SPJ3_RICCO4.4e-1572.22Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCO... [more]
A0A067GU95_CITSI3.8e-1470.37Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044997mg PE=3 SV=1[more]
V4TDX4_9ROSI3.8e-1470.37Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033617mg PE=3 SV=1[more]
BLAST of Csa5G598790 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G51940.12.0e-1152.94 protein kinase family protein / peptidoglycan-binding LysM domain-co... [more]
BLAST of Csa5G598790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708647|ref|XP_011656254.1|3.2e-22100.00PREDICTED: lysM domain receptor-like kinase 3 [Cucumis sativus][more]
gi|700196594|gb|KGN51771.1|3.2e-22100.00hypothetical protein Csa_5G598790 [Cucumis sativus][more]
gi|659092312|ref|XP_008447006.1|3.2e-22100.00PREDICTED: lysM domain receptor-like kinase 3 [Cucumis melo][more]
gi|645230546|ref|XP_008221984.1|6.4e-1574.07PREDICTED: lysM domain receptor-like kinase 3 [Prunus mume][more]
gi|596232251|ref|XP_007224308.1|6.4e-1574.07hypothetical protein PRUPE_ppa019853mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000186 activation of MAPKK activity
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
cellular_component GO:0005622 intracellular
molecular_function GO:0005524 ATP binding
molecular_function GO:0004709 MAP kinase kinase kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G598790.1Csa5G598790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 1..46
score: 1.2
NoneNo IPR availablePANTHERPTHR27001:SF53SUBFAMILY NOT NAMEDcoord: 1..46
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G598790MELO3C011966Melon (DHL92) v3.5.1cumeB377
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G598790Wax gourdcuwgoB490
Csa5G598790Wax gourdcuwgoB497
Csa5G598790Wax gourdcuwgoB512
Csa5G598790Cucumber (Chinese Long) v2cucuB064
Csa5G598790Cucumber (Gy14) v1cgycuB108
Csa5G598790Cucumber (Gy14) v1cgycuB410
Csa5G598790Cucumber (Gy14) v1cgycuB551
Csa5G598790Cucurbita maxima (Rimu)cmacuB190
Csa5G598790Cucurbita maxima (Rimu)cmacuB413
Csa5G598790Cucurbita maxima (Rimu)cmacuB749
Csa5G598790Cucurbita maxima (Rimu)cmacuB803
Csa5G598790Cucurbita moschata (Rifu)cmocuB402
Csa5G598790Cucurbita moschata (Rifu)cmocuB739
Csa5G598790Cucurbita moschata (Rifu)cmocuB793
Csa5G598790Melon (DHL92) v3.5.1cumeB386
Csa5G598790Melon (DHL92) v3.5.1cumeB393
Csa5G598790Watermelon (Charleston Gray)cuwcgB378
Csa5G598790Watermelon (Charleston Gray)cuwcgB394
Csa5G598790Watermelon (Charleston Gray)cuwcgB411
Csa5G598790Watermelon (97103) v1cuwmB401
Csa5G598790Cucurbita pepo (Zucchini)cpecuB047
Csa5G598790Cucurbita pepo (Zucchini)cpecuB118
Csa5G598790Cucurbita pepo (Zucchini)cpecuB440
Csa5G598790Bottle gourd (USVL1VR-Ls)culsiB349
Csa5G598790Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G598790Bottle gourd (USVL1VR-Ls)culsiB388
Csa5G598790Cucumber (Gy14) v2cgybcuB038
Csa5G598790Cucumber (Gy14) v2cgybcuB076
Csa5G598790Cucumber (Gy14) v2cgybcuB223
Csa5G598790Melon (DHL92) v3.6.1cumedB359
Csa5G598790Melon (DHL92) v3.6.1cumedB370
Csa5G598790Melon (DHL92) v3.6.1cumedB376
Csa5G598790Silver-seed gourdcarcuB0271
Csa5G598790Silver-seed gourdcarcuB0530
Csa5G598790Silver-seed gourdcarcuB0648
Csa5G598790Silver-seed gourdcarcuB0743
Csa5G598790Watermelon (97103) v2cuwmbB383
Csa5G598790Watermelon (97103) v2cuwmbB400