Csa5G598660 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G598660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 21765474 .. 21765870 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTGGTTACTTGTGTAGCGCTGTTTCCTTCAGTTTATACAATCGTGGATTTGAAGGGAAAACCTCAGGTGTAATAATTTTTTGCTGGTTCGATTTGAGTTAGGAATGGGGTGTAAAAAATGTATGATGGGAAAAGAAATTTAACTCACCGTTGGAATTTTTTGTGTATGTATTTGAGTTCTTAAATCTTAGGAGCTTCCACCATCTGTCTGTGCTTTTACATCTGAGTTTCTTTATCGAAAAGGGGAAAATGATGAACGAAGCTCATCGTTTATCGCATATAAAAAGGCTTTGCAGTGGTTCAGAACTATCCCATGGGAATGGGTTTGGACTTCAATGGATATGATGTGCTGCTTTTTGGTCTCTCTGGTGCCTAACTTCCAGTGGGATTAG

mRNA sequence

ATGATATTGGTTACTTGTGTAGCGCTGTTTCCTTCAGTTTATACAATCGTGGATTTGAAGGGAAAACCTCAGGAGCTTCCACCATCTGTCTGTGCTTTTACATCTGAGTTTCTTTATCGAAAAGGGGAAAATGATGAACGAAGCTCATCGTTTATCGCATATAAAAAGGCTTTGCAGTGGTTCAGAACTATCCCATGGGAATGGGTTTGGACTTCAATGGATATGATGTGCTGCTTTTTGGTCTCTCTGGTGCCTAACTTCCAGTGGGATTAG

Coding sequence (CDS)

ATGATATTGGTTACTTGTGTAGCGCTGTTTCCTTCAGTTTATACAATCGTGGATTTGAAGGGAAAACCTCAGGAGCTTCCACCATCTGTCTGTGCTTTTACATCTGAGTTTCTTTATCGAAAAGGGGAAAATGATGAACGAAGCTCATCGTTTATCGCATATAAAAAGGCTTTGCAGTGGTTCAGAACTATCCCATGGGAATGGGTTTGGACTTCAATGGATATGATGTGCTGCTTTTTGGTCTCTCTGGTGCCTAACTTCCAGTGGGATTAG

Protein sequence

MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQWFRTIPWEWVWTSMDMMCCFLVSLVPNFQWD*
Homology
[Close]
BLAST of Csa5G598660 vs. TrEMBL
Match: A0A0A0KQ53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598660 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQW 60
          MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQW
Sbjct: 1  MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQW 60

Query: 61 FRTIPWEWVWTSMDMMCCFLVSLVPNFQWD 91
          FRTIPWEWVWTSMDMMCCFLVSLVPNFQWD
Sbjct: 61 FRTIPWEWVWTSMDMMCCFLVSLVPNFQWD 90

[Close]
BLAST of Csa5G598660 vs. NCBI nr
Match: gi|700196581|gb|KGN51758.1| (hypothetical protein Csa_5G598660 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQW 60
          MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQW
Sbjct: 1  MILVTCVALFPSVYTIVDLKGKPQELPPSVCAFTSEFLYRKGENDERSSSFIAYKKALQW 60

Query: 61 FRTIPWEWVWTSMDMMCCFLVSLVPNFQWD 91
          FRTIPWEWVWTSMDMMCCFLVSLVPNFQWD
Sbjct: 61 FRTIPWEWVWTSMDMMCCFLVSLVPNFQWD 90

The following BLAST results are available for this feature:
BLAST of Csa5G598660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ53_CUCSA1.9e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598660 PE=4 SV=1[more]
BLAST of Csa5G598660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196581|gb|KGN51758.1|2.8e-47100.00hypothetical protein Csa_5G598660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU135160cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G598660.1Csa5G598660.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU135160CU135160transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G598660Watermelon (97103) v2cuwmbB383
Csa5G598660Watermelon (97103) v2cuwmbB400
Csa5G598660Wax gourdcuwgoB490
Csa5G598660Wax gourdcuwgoB512
Csa5G598660Cucumber (Chinese Long) v2cucuB064
Csa5G598660Cucumber (Gy14) v1cgycuB410
Csa5G598660Cucumber (Gy14) v1cgycuB551
Csa5G598660Cucurbita maxima (Rimu)cmacuB190
Csa5G598660Cucurbita maxima (Rimu)cmacuB413
Csa5G598660Cucurbita maxima (Rimu)cmacuB749
Csa5G598660Cucurbita maxima (Rimu)cmacuB803
Csa5G598660Cucurbita moschata (Rifu)cmocuB402
Csa5G598660Cucurbita moschata (Rifu)cmocuB739
Csa5G598660Cucurbita moschata (Rifu)cmocuB793
Csa5G598660Melon (DHL92) v3.5.1cumeB377
Csa5G598660Melon (DHL92) v3.5.1cumeB386
Csa5G598660Melon (DHL92) v3.5.1cumeB393
Csa5G598660Watermelon (Charleston Gray)cuwcgB394
Csa5G598660Watermelon (Charleston Gray)cuwcgB411
Csa5G598660Watermelon (97103) v1cuwmB376
Csa5G598660Watermelon (97103) v1cuwmB401
Csa5G598660Cucurbita pepo (Zucchini)cpecuB047
Csa5G598660Cucurbita pepo (Zucchini)cpecuB118
Csa5G598660Cucurbita pepo (Zucchini)cpecuB440
Csa5G598660Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G598660Bottle gourd (USVL1VR-Ls)culsiB388
Csa5G598660Cucumber (Gy14) v2cgybcuB076
Csa5G598660Cucumber (Gy14) v2cgybcuB223
Csa5G598660Melon (DHL92) v3.6.1cumedB359
Csa5G598660Melon (DHL92) v3.6.1cumedB376
Csa5G598660Silver-seed gourdcarcuB0271
Csa5G598660Silver-seed gourdcarcuB0530
Csa5G598660Silver-seed gourdcarcuB0648
Csa5G598660Silver-seed gourdcarcuB0743