Csa5G593420 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G593420
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 21521246 .. 21521503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

mRNA sequence

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

Coding sequence (CDS)

ATGTTGCAAAGGCCTCGGCGAAGCCAATCGAAATCGTACCCACGATGGAATTCAGATATGTGGGTCAAAAACCCTACGACGAGTAACTGGGACCGCCGGAGAAAAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGGGTTCGCAGAGCCGCCGAGAAGGAGAAACAGTGAGCAAATGCCAATATTTATATGGCGTCTGATGCTCGCCGGAGAAGAAGAGTGA

Protein sequence

MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFAEPPRRRNSEQMPIFIWRLMLAGEEE*

Homology

[Close]

BLAST of Csa5G593420 vs. TrEMBL
Match: A0A0A0KQ33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G593420 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.6e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60
          MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA
Sbjct: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60

Query: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 86
          EPPRRRNSEQMPIFIWRLMLAGEEE
Sbjct: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 85

[Close]

BLAST of Csa5G593420 vs. NCBI nr
Match: gi|700196551|gb|KGN51728.1| (hypothetical protein Csa_5G593420 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 6.6e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60
          MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA
Sbjct: 1  MLQRPRRSQSKSYPRWNSDMWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRRRGFA 60

Query: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 86
          EPPRRRNSEQMPIFIWRLMLAGEEE
Sbjct: 61 EPPRRRNSEQMPIFIWRLMLAGEEE 85

The following BLAST results are available for this feature:

BLAST of Csa5G593420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ33_CUCSA	4.6e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G593420 PE=4 SV=1	[more]

BLAST of Csa5G593420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196551\|gb\|KGN51728.1\|	6.6e-43	100.00	hypothetical protein Csa_5G593420 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU137861	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G593420.1	Csa5G593420.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU137861	CU137861	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G593420	MELO3C011923	Melon (DHL92) v3.5.1	cumeB377
Csa5G593420	MELO3C011923.2	Melon (DHL92) v3.6.1	cumedB359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G593420	Watermelon (97103) v2	cuwmbB383
Csa5G593420	Watermelon (97103) v2	cuwmbB400
Csa5G593420	Wax gourd	cuwgoB512
Csa5G593420	Cucumber (Chinese Long) v2	cucuB064
Csa5G593420	Cucumber (Gy14) v1	cgycuB410
Csa5G593420	Cucumber (Gy14) v1	cgycuB551
Csa5G593420	Cucurbita maxima (Rimu)	cmacuB413
Csa5G593420	Cucurbita maxima (Rimu)	cmacuB749
Csa5G593420	Cucurbita maxima (Rimu)	cmacuB803
Csa5G593420	Cucurbita moschata (Rifu)	cmocuB173
Csa5G593420	Cucurbita moschata (Rifu)	cmocuB402
Csa5G593420	Cucurbita moschata (Rifu)	cmocuB739
Csa5G593420	Cucurbita moschata (Rifu)	cmocuB793
Csa5G593420	Melon (DHL92) v3.5.1	cumeB393
Csa5G593420	Watermelon (Charleston Gray)	cuwcgB394
Csa5G593420	Watermelon (Charleston Gray)	cuwcgB411
Csa5G593420	Watermelon (97103) v1	cuwmB376
Csa5G593420	Watermelon (97103) v1	cuwmB401
Csa5G593420	Cucurbita pepo (Zucchini)	cpecuB047
Csa5G593420	Cucurbita pepo (Zucchini)	cpecuB118
Csa5G593420	Cucurbita pepo (Zucchini)	cpecuB440
Csa5G593420	Cucurbita pepo (Zucchini)	cpecuB836
Csa5G593420	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G593420	Bottle gourd (USVL1VR-Ls)	culsiB388
Csa5G593420	Cucumber (Gy14) v2	cgybcuB076
Csa5G593420	Cucumber (Gy14) v2	cgybcuB223
Csa5G593420	Melon (DHL92) v3.6.1	cumedB376
Csa5G593420	Silver-seed gourd	carcuB0271
Csa5G593420	Silver-seed gourd	carcuB0530
Csa5G593420	Silver-seed gourd	carcuB0648