Csa5G593370 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G593370
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ABC transporter B family member
Location	Chr5 : 21499096 .. 21499356 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGAAGAAAACTGGGGTATTCAGATATGCTGATTGGTTGGATCAGTTGCTAATGTTTCTTGGTTGCTTGGGGAGTATTGGAGATGGGCTTACAACTCCACTCACTATGCTTGTTCTAAGTGGTATGATCAATCACTATTCTGTTTCTGATTCCAACTCTTTTTCAAATCATGTTGTGGACAAGGTAATTTCTTTATTATTACTTTCTATACTTATAATAGTTTCTTCCATTGGAATTTACTGGTTGTGGTTGTAA

mRNA sequence

ATGGGAAAGAAGAAAACTGGGGTATTCAGATATGCTGATTGGTTGGATCAGTTGCTAATGTTTCTTGGTTGCTTGGGGAGTATTGGAGATGGGCTTACAACTCCACTCACTATGCTTGTTCTAAGTGGTATGATCAATCACTATTCTGTTTCTGATTCCAACTCTTTTTCAAATCATGTTGTGGACAAGGTAATTTCTTTATTATTACTTTCTATACTTATAATAGTTTCTTCCATTGGAATTTACTGGTTGTGGTTGTAA

Coding sequence (CDS)

ATGGGAAAGAAGAAAACTGGGGTATTCAGATATGCTGATTGGTTGGATCAGTTGCTAATGTTTCTTGGTTGCTTGGGGAGTATTGGAGATGGGCTTACAACTCCACTCACTATGCTTGTTCTAAGTGGTATGATCAATCACTATTCTGTTTCTGATTCCAACTCTTTTTCAAATCATGTTGTGGACAAGGTAATTTCTTTATTATTACTTTCTATACTTATAATAGTTTCTTCCATTGGAATTTACTGGTTGTGGTTGTAA

Protein sequence

MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHVVDKVISLLLLSILIIVSSIGIYWLWL*

Homology

[Close]

BLAST of Csa5G593370 vs. Swiss-Prot
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-07
Identity = 23/77 (29.87%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 8  VFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHVVDKVISL 67
          +FR+ADW+D +LM LG +G+IGDG++T ++++ +S ++N    S  N  S +  +++   
Sbjct: 21 IFRFADWIDIVLMVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEEIQKC 80

Query: 68 LLLSILIIVSSIGIYWL 85
           L  + + ++ +G+ ++
Sbjct: 81 SLYFVYLGLAILGVAFM 97

[Close]

BLAST of Csa5G593370 vs. Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-06
Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 8  VFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSN--SFSNHVVDKVI 67
          +F +AD +D LLM LG +G++GDG TTPL +L+ S ++N+   S  N  +F   +    +
Sbjct: 23 IFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQSISKNSV 82

Query: 68 SLLLLS 72
          +LL ++
Sbjct: 83 ALLYVA 88

[Close]

BLAST of Csa5G593370 vs. TrEMBL
Match: A0A0A0KS41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G593370 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.4e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60
          MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV
Sbjct: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60

Query: 61 VDKVISLLLLSILIIVSSIGIYWLWL 87
          VDKVISLLLLSILIIVSSIGIYWLWL
Sbjct: 61 VDKVISLLLLSILIIVSSIGIYWLWL 86

[Close]

BLAST of Csa5G593370 vs. TrEMBL
Match: A0A067JVB0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17871 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-12
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1   MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSN---SFS 60
           M  ++   FRYADW+D+ LM  G LGSIGDGL TPLTM  LSG+IN Y+ S+S    S S
Sbjct: 573 MKNREGSFFRYADWIDKFLMLFGILGSIGDGLLTPLTMYTLSGLINEYATSESGTGISLS 632

Query: 61  NHVVDKVISLLLLSILIIV 77
             VVDK  SL LL + I V
Sbjct: 633 IEVVDK-YSLRLLYVAIFV 650

[Close]

BLAST of Csa5G593370 vs. TrEMBL
Match: A0A067JVB0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17871 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.6e-12
Identity = 44/75 (58.67%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 5  KTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSN---SFSNHVV 64
          K   FRYADW+D+ LM  G LGSIGDGL TPLTM  LSG+IN Y+ S+S    S S  VV
Sbjct: 4  KGSFFRYADWIDKFLMLFGILGSIGDGLLTPLTMYTLSGLINEYATSESGTGISLSIEVV 63

Query: 65 DKVISLLLLSILIIV 77
          DK  SL LL + I V
Sbjct: 64 DK-YSLRLLYVAIFV 77

HSP 2 Score: 77.8 bits (190), Expect = 7.3e-12
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 4  KKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHY--SVSDSNSFSNHVV 63
          +K G+FRY D +D+LLMF G LG IGDGL TPL M +LS +I+ Y  + +D+NSF+N +V
Sbjct: 3  RKGGIFRYGDGVDKLLMFFGTLGCIGDGLMTPLNMFILSSLIDDYGGASNDNNSFTNSIV 62

Query: 64 DKV-ISLLLLSILIIVSSI--GIYW 84
          DK  + LL ++I + +S+   GI W
Sbjct: 63 DKYSLRLLYVAIGVGISACIGGICW 87

[Close]

BLAST of Csa5G593370 vs. TrEMBL
Match: A0A0D2Q8R0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G188900 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60
          M  K  G+FRYAD +D++L+FLG LGSIGDG+ + + M +LSG +N Y  S   SFSN +
Sbjct: 1  MANKGGGLFRYADGVDKVLLFLGTLGSIGDGMMSSVNMYILSGALNDYG-SSHQSFSNQI 60

Query: 61 VDKVISLLLLSILIIVSSIGIYW 84
          VDK+ S+   + L +    G+ W
Sbjct: 61 VDKLKSIFHFNCLYVYIPEGVCW 82

[Close]

BLAST of Csa5G593370 vs. TrEMBL
Match: W9RMX8_9ROSA (ABC transporter B family member 15 OS=Morus notabilis GN=L484_027646 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 4  KKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHVVDK 63
          K  G+FRYAD  D+LLM  G LGSIGDGL TPLTMLV SG++N Y  S S S SN  VDK
Sbjct: 3  KTGGIFRYADGADKLLMVFGTLGSIGDGLMTPLTMLVFSGLLNEYGASKS-SLSNDTVDK 62

Query: 64 VISLLLLSILI 75
            SL LL + I
Sbjct: 63 -YSLRLLYVAI 71

[Close]

BLAST of Csa5G593370 vs. TAIR10
Match: AT3G28345.1 (AT3G28345.1 ABC transporter family protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.8e-07
Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 8  VFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSN--SFSNHVVDKVI 67
          +F +AD +D LLM LG +G++GDG TTPL +L+ S ++N+   S  N  +F   +    +
Sbjct: 23 IFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQSISKNSV 82

Query: 68 SLLLLS 72
          +LL ++
Sbjct: 83 ALLYVA 88

[Close]

BLAST of Csa5G593370 vs. TAIR10
Match: AT3G28380.1 (AT3G28380.1 P-glycoprotein 17)

HSP 1 Score: 50.1 bits (118), Expect = 8.2e-07
Identity = 22/66 (33.33%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 8  VFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSN--SFSNHVVDKVI 67
          +F +AD +D +LM LG +G++GDG  TP+ + + + ++N+   S SN  +F   +   V+
Sbjct: 23 IFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLGTSSSNNKTFMQTISKNVV 82

Query: 68 SLLLLS 72
          +LL ++
Sbjct: 83 ALLYVA 88

[Close]

BLAST of Csa5G593370 vs. NCBI nr
Match: gi|700196547|gb|KGN51724.1| (hypothetical protein Csa_5G593370 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60
          MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV
Sbjct: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60

Query: 61 VDKVISLLLLSILIIVSSIGIYWLWL 87
          VDKVISLLLLSILIIVSSIGIYWLWL
Sbjct: 61 VDKVISLLLLSILIIVSSIGIYWLWL 86

[Close]

BLAST of Csa5G593370 vs. NCBI nr
Match: gi|449435440|ref|XP_004135503.1| (PREDICTED: ABC transporter B family member 15-like [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60
          MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV
Sbjct: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60

Query: 61 VDKVISLLLLSILIIVSSIGI 82
          VDK      L +L I   +G+
Sbjct: 61 VDK----YTLKLLYIAIGVGL 77

[Close]

BLAST of Csa5G593370 vs. NCBI nr
Match: gi|659090647|ref|XP_008446126.1| (PREDICTED: putative multidrug resistance protein [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = 1


Query: 1  MGKKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60
          MGKKK GVFRYADW+D LLM LGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV
Sbjct: 1  MGKKKNGVFRYADWVDMLLMVLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHV 60

Query: 61 VDK-VISLLLLSILI 75
          VDK  + L+ ++I +
Sbjct: 61 VDKYTLKLIYIAICV 75

[Close]

BLAST of Csa5G593370 vs. NCBI nr
Match: gi|694357674|ref|XP_009359349.1| (PREDICTED: putative multidrug resistance protein [Pyrus x bretschneideri])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 4  KKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHVVDK 63
          KK G+FRYAD +D+LLM  G LGSIGDGL TPLTM VLS +IN Y    + SFSN VVDK
Sbjct: 3  KKGGIFRYADGVDKLLMVFGTLGSIGDGLMTPLTMFVLSRVINEYG-GATLSFSNEVVDK 62

Query: 64 V-ISLLLLSILIIVSSI--GIYW 84
            + LL+L+I + +S+   G+ W
Sbjct: 63 YGLRLLVLAIGVGISAFMEGVCW 84

[Close]

BLAST of Csa5G593370 vs. NCBI nr
Match: gi|645230591|ref|XP_008222004.1| (PREDICTED: LOW QUALITY PROTEIN: putative multidrug resistance protein [Prunus mume])

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-12
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 3  KKKTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSN-SFSNHVV 62
          +KK G+F+YAD +D+LLM  G LGSIGDGL TPLTMLVLS +IN Y       +FSN +V
Sbjct: 2  RKKGGLFKYADGVDKLLMVFGTLGSIGDGLMTPLTMLVLSRVINEYGGGQGTLTFSNAIV 61

Query: 63 DKV-ISLLLLSILIIVSSI--GIYW 84
          DK  + LL+++I + VS+   GI W
Sbjct: 62 DKYSLRLLIVAIGVGVSAFIEGICW 86

The following BLAST results are available for this feature:

BLAST of Csa5G593370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB8B_ARATH	7.7e-07	29.87	Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5...	[more]
AB15B_ARATH	8.6e-06	37.88	ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=3 SV=1	[more]

BLAST of Csa5G593370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS41_CUCSA	4.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G593370 PE=4 SV=1	[more]
A0A067JVB0_JATCU	4.3e-12	55.70	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17871 PE=4 SV=1	[more]
A0A067JVB0_JATCU	5.6e-12	58.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17871 PE=4 SV=1	[more]
A0A0D2Q8R0_GOSRA	1.2e-11	45.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G188900 PE=4 SV=1	[more]
W9RMX8_9ROSA	1.2e-11	61.97	ABC transporter B family member 15 OS=Morus notabilis GN=L484_027646 PE=4 SV=1	[more]

BLAST of Csa5G593370 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28345.1	4.8e-07	37.88	ABC transporter family protein	[more]
AT3G28380.1	8.2e-07	33.33	P-glycoprotein 17	[more]

BLAST of Csa5G593370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196547\|gb\|KGN51724.1\|	6.3e-41	100.00	hypothetical protein Csa_5G593370 [Cucumis sativus]	[more]
gi\|449435440\|ref\|XP_004135503.1\|	1.2e-28	82.72	PREDICTED: ABC transporter B family member 15-like [Cucumis sativus]	[more]
gi\|659090647\|ref\|XP_008446126.1\|	3.3e-26	81.33	PREDICTED: putative multidrug resistance protein [Cucumis melo]	[more]
gi\|694357674\|ref\|XP_009359349.1\|	1.2e-12	56.63	PREDICTED: putative multidrug resistance protein [Pyrus x bretschneideri]	[more]
gi\|645230591\|ref\|XP_008222004.1\|	3.6e-12	54.12	PREDICTED: LOW QUALITY PROTEIN: putative multidrug resistance protein [Prunus mu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0042908	xenobiotic transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008559	xenobiotic-transporting ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G593370.1	Csa5G593370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.1560.10		coord: 8..82 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G593370	Cla010011	Watermelon (97103) v1	cuwmB401
Csa5G593370	ClCG05G026090	Watermelon (Charleston Gray)	cuwcgB394
Csa5G593370	MELO3C011919.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G593370	Cla97C05G108300	Watermelon (97103) v2	cuwmbB383
Csa5G593370	CSPI05G21900	Wild cucumber (PI 183967)	cpicuB239
Csa5G593370	Cucsa.075250	Cucumber (Gy14) v1	cgycuB073

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G593370	Melon (DHL92) v3.5.1	cumeB377
Csa5G593370	Melon (DHL92) v3.5.1	cumeB393
Csa5G593370	Watermelon (Charleston Gray)	cuwcgB411
Csa5G593370	Watermelon (97103) v1	cuwmB376
Csa5G593370	Cucurbita pepo (Zucchini)	cpecuB047
Csa5G593370	Cucurbita pepo (Zucchini)	cpecuB118
Csa5G593370	Cucurbita pepo (Zucchini)	cpecuB440
Csa5G593370	Cucurbita pepo (Zucchini)	cpecuB836
Csa5G593370	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G593370	Bottle gourd (USVL1VR-Ls)	culsiB388
Csa5G593370	Cucumber (Gy14) v2	cgybcuB076
Csa5G593370	Cucumber (Gy14) v2	cgybcuB223
Csa5G593370	Melon (DHL92) v3.6.1	cumedB376
Csa5G593370	Silver-seed gourd	carcuB0271
Csa5G593370	Silver-seed gourd	carcuB0530
Csa5G593370	Silver-seed gourd	carcuB0648
Csa5G593370	Silver-seed gourd	carcuB1084
Csa5G593370	Watermelon (97103) v2	cuwmbB400
Csa5G593370	Wax gourd	cuwgoB512
Csa5G593370	Cucumber (Chinese Long) v2	cucuB064
Csa5G593370	Cucumber (Gy14) v1	cgycuB551
Csa5G593370	Cucurbita maxima (Rimu)	cmacuB413
Csa5G593370	Cucurbita maxima (Rimu)	cmacuB749
Csa5G593370	Cucurbita maxima (Rimu)	cmacuB803
Csa5G593370	Cucurbita moschata (Rifu)	cmocuB173
Csa5G593370	Cucurbita moschata (Rifu)	cmocuB402
Csa5G593370	Cucurbita moschata (Rifu)	cmocuB739
Csa5G593370	Cucurbita moschata (Rifu)	cmocuB793