Csa5G590180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G590180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 21377742 .. 21377927 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTAGATGGTGGTCTGTCCTGGGCAGATCAATGGGATTACAACCCTGACCCCCCACCATCGTCATCGGAAAATGAGAAGAAGAAGAACAAAGATGGATCTTCAGACAAGAGCAAATTTAGGAAGACAATCTTGGGCTTCAAGTGGATGAAAGAATTGCGAAAGAAATCTGACAAATCTTGA

mRNA sequence

ATGGGTTTAGATGGTGGTCTGTCCTGGGCAGATCAATGGGATTACAACCCTGACCCCCCACCATCGTCATCGGAAAATGAGAAGAAGAAGAACAAAGATGGATCTTCAGACAAGAGCAAATTTAGGAAGACAATCTTGGGCTTCAAGTGGATGAAAGAATTGCGAAAGAAATCTGACAAATCTTGA

Coding sequence (CDS)

ATGGGTTTAGATGGTGGTCTGTCCTGGGCAGATCAATGGGATTACAACCCTGACCCCCCACCATCGTCATCGGAAAATGAGAAGAAGAAGAACAAAGATGGATCTTCAGACAAGAGCAAATTTAGGAAGACAATCTTGGGCTTCAAGTGGATGAAAGAATTGCGAAAGAAATCTGACAAATCTTGA

Protein sequence

MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDKS*

Homology

[Close]

BLAST of Csa5G590180 vs. TrEMBL
Match: A0A0A0KVC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590180 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.0e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 60
          MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK
Sbjct: 1  MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Csa5G590180 vs. TrEMBL
Match: A0A151SP79_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_002802 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.5e-15
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 61
          +D G+SWADQWD NPDP P+S E +KKK KDGSS KSKF KT+L FKW+KELRKK++K
Sbjct: 1  MDSGMSWADQWDNNPDPEPAS-EKDKKKGKDGSS-KSKFGKTVLSFKWVKELRKKNNK 56

[Close]

BLAST of Csa5G590180 vs. TrEMBL
Match: W9RC84_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027584 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.5e-15
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 61
          ++ GLSWADQWDYN DPPP +  ++KKK KDGS  KSKF K+IL FKW+KELR+KS K
Sbjct: 1  MNSGLSWADQWDYNSDPPPEAPRDDKKKKKDGS--KSKFGKSILSFKWIKELRRKSQK 56

[Close]

BLAST of Csa5G590180 vs. TrEMBL
Match: A0A087HQU8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G265100 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.5e-15
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSS--ENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 62
          +D GLSWADQWDYN DPPP+S+  +++KKK K     KS F KTILG KW+KELRKKSD 
Sbjct: 1  MDSGLSWADQWDYNSDPPPNSTNEDDKKKKKKKEDGSKSSFGKTILGLKWVKELRKKSDN 60

[Close]

BLAST of Csa5G590180 vs. TrEMBL
Match: A0A0D2T1I4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G163100 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 61
          +D GLSWADQWD NPDP P+  + +KKK K+  S KSKF K++L FKW+KELRKK+++
Sbjct: 1  MDSGLSWADQWDTNPDPSPAEPDKKKKKKKEEGSTKSKFSKSVLSFKWIKELRKKAEQ 58

[Close]

BLAST of Csa5G590180 vs. TAIR10
Match: AT1G67670.1 (AT1G67670.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-16
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 3  LDGGLSWADQWDYN-PDPPPSSSE-------NEKKKNKDGSSDKSKFRKTILGFKWMKEL 61
          +D G SWADQWDYN PDP PSS++       N+KKK +DGS  KS   KT+LGFKWMKEL
Sbjct: 1  MDSGPSWADQWDYNNPDPLPSSTKEDESKKKNKKKKEEDGS--KSSLGKTLLGFKWMKEL 60

[Close]

BLAST of Csa5G590180 vs. TAIR10
Match: AT1G24405.1 (AT1G24405.1 unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-15
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSS----ENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKS 61
          +D GLSWADQWDYN DPPP+SS    + +KKK K     KS   K ILGFKWMK L KKS
Sbjct: 1  MDSGLSWADQWDYNSDPPPNSSNEDDKKKKKKKKKEDGSKSGIGKAILGFKWMK-LGKKS 60

[Close]

BLAST of Csa5G590180 vs. NCBI nr
Match: gi|449435454|ref|XP_004135510.1| (PREDICTED: uncharacterized protein LOC101219061 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 60
          MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK
Sbjct: 1  MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Csa5G590180 vs. NCBI nr
Match: gi|659090574|ref|XP_008446089.1| (PREDICTED: uncharacterized protein LOC103488917 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGLDGGLSWADQWDYNPDPPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 60
          MGLDGGLSWADQWDYNPDPPPSSS+N+KKKNKDGSSDKSKFRKTILGFKWMK+LRKKSDK
Sbjct: 1  MGLDGGLSWADQWDYNPDPPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKKSDK 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Csa5G590180 vs. NCBI nr
Match: gi|729410753|ref|XP_010556172.1| (PREDICTED: uncharacterized protein LOC104825525 [Tarenaya hassleriana])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 3  LDGGLSWADQWDY-NPDPPP-SSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 61
          +D GLSWADQWDY NPDPPP SS E+EKKK KDGS  KSK  KTILGFKWMKELRKKSDK
Sbjct: 1  MDSGLSWADQWDYTNPDPPPRSSEEDEKKKKKDGS--KSKLGKTILGFKWMKELRKKSDK 58

[Close]

BLAST of Csa5G590180 vs. NCBI nr
Match: gi|1009153039|ref|XP_015894420.1| (PREDICTED: uncharacterized protein LOC107428400 [Ziziphus jujuba])

HSP 1 Score: 87.4 bits (215), Expect = 9.4e-15
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSSENE-KKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 61
          +D GLSWADQWD  PDPP SSS N  KKK+KDGS D+SKF  ++L FKW+KELRKKS K
Sbjct: 1  MDSGLSWADQWDTTPDPPLSSSSNNGKKKSKDGSDDRSKFGISMLSFKWVKELRKKSQK 59

[Close]

BLAST of Csa5G590180 vs. NCBI nr
Match: gi|674251735|gb|KFK44500.1| (hypothetical protein AALP_AA1G265100 [Arabis alpina])

HSP 1 Score: 87.4 bits (215), Expect = 9.4e-15
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 3  LDGGLSWADQWDYNPDPPPSSS--ENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSDK 62
          +D GLSWADQWDYN DPPP+S+  +++KKK K     KS F KTILG KW+KELRKKSD 
Sbjct: 1  MDSGLSWADQWDYNSDPPPNSTNEDDKKKKKKKEDGSKSSFGKTILGLKWVKELRKKSDN 60

The following BLAST results are available for this feature:

BLAST of Csa5G590180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVC1_CUCSA	8.0e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590180 PE=4 SV=1	[more]
A0A151SP79_CAJCA	6.5e-15	70.69	Uncharacterized protein OS=Cajanus cajan GN=KK1_002802 PE=4 SV=1	[more]
W9RC84_9ROSA	6.5e-15	67.24	Uncharacterized protein OS=Morus notabilis GN=L484_027584 PE=4 SV=1	[more]
A0A087HQU8_ARAAL	6.5e-15	65.57	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G265100 PE=4 SV=1	[more]
A0A0D2T1I4_GOSRA	3.2e-14	60.34	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G163100 PE=4 SV=1	[more]

BLAST of Csa5G590180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67670.1	4.0e-16	63.64	unknown protein	[more]
AT1G24405.1	4.5e-15	62.90	unknown protein	[more]

BLAST of Csa5G590180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435454\|ref\|XP_004135510.1\|	1.1e-28	100.00	PREDICTED: uncharacterized protein LOC101219061 [Cucumis sativus]	[more]
gi\|659090574\|ref\|XP_008446089.1\|	1.3e-27	95.08	PREDICTED: uncharacterized protein LOC103488917 [Cucumis melo]	[more]
gi\|729410753\|ref\|XP_010556172.1\|	2.6e-17	81.67	PREDICTED: uncharacterized protein LOC104825525 [Tarenaya hassleriana]	[more]
gi\|1009153039\|ref\|XP_015894420.1\|	9.4e-15	69.49	PREDICTED: uncharacterized protein LOC107428400 [Ziziphus jujuba]	[more]
gi\|674251735\|gb\|KFK44500.1\|	9.4e-15	65.57	hypothetical protein AALP_AA1G265100 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096039	cucumber EST collection version 3.0	transcribed_cluster
CU104987	cucumber EST collection version 3.0	transcribed_cluster
CU133093	cucumber EST collection version 3.0	transcribed_cluster
CU166160	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G590180.1	Csa5G590180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU133093	CU133093	transcribed_cluster
CU104987	CU104987	transcribed_cluster
CU166160	CU166160	transcribed_cluster
CU096039	CU096039	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386	FAMILY NOT NAMED	coord: 3..60 score: 3.0
None	No IPR available	PANTHER	PTHR33386:SF1	F12A21.18-RELATED	coord: 3..60 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G590180	MELO3C011896	Melon (DHL92) v3.5.1	cumeB377
Csa5G590180	MELO3C011896.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G590180	Bhi07G001501	Wax gourd	cuwgoB512

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G590180	Watermelon (97103) v2	cuwmbB383
Csa5G590180	Watermelon (97103) v2	cuwmbB400
Csa5G590180	Wax gourd	cuwgoB489
Csa5G590180	Cucumber (Chinese Long) v2	cucuB064
Csa5G590180	Cucumber (Gy14) v1	cgycuB073
Csa5G590180	Cucumber (Gy14) v1	cgycuB551
Csa5G590180	Cucurbita maxima (Rimu)	cmacuB189
Csa5G590180	Cucurbita maxima (Rimu)	cmacuB413
Csa5G590180	Cucurbita maxima (Rimu)	cmacuB749
Csa5G590180	Cucurbita maxima (Rimu)	cmacuB803
Csa5G590180	Cucurbita moschata (Rifu)	cmocuB173
Csa5G590180	Cucurbita moschata (Rifu)	cmocuB402
Csa5G590180	Cucurbita moschata (Rifu)	cmocuB739
Csa5G590180	Cucurbita moschata (Rifu)	cmocuB793
Csa5G590180	Melon (DHL92) v3.5.1	cumeB393
Csa5G590180	Watermelon (Charleston Gray)	cuwcgB394
Csa5G590180	Watermelon (Charleston Gray)	cuwcgB411
Csa5G590180	Watermelon (97103) v1	cuwmB376
Csa5G590180	Watermelon (97103) v1	cuwmB401
Csa5G590180	Cucurbita pepo (Zucchini)	cpecuB047
Csa5G590180	Cucurbita pepo (Zucchini)	cpecuB118
Csa5G590180	Cucurbita pepo (Zucchini)	cpecuB440
Csa5G590180	Cucurbita pepo (Zucchini)	cpecuB836
Csa5G590180	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G590180	Bottle gourd (USVL1VR-Ls)	culsiB388
Csa5G590180	Cucumber (Gy14) v2	cgybcuB076
Csa5G590180	Cucumber (Gy14) v2	cgybcuB223
Csa5G590180	Melon (DHL92) v3.6.1	cumedB376
Csa5G590180	Silver-seed gourd	carcuB0271
Csa5G590180	Silver-seed gourd	carcuB0648
Csa5G590180	Silver-seed gourd	carcuB0713