Csa5G587230 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G587230
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 21052458 .. 21052805 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGGAAACGAGACAGGTGTTATTTCACATTTCCGTTGATTTTTCAGTAGAAAGAAAGACCGAAAAAGGAGAGAACAGAGATTCGAAGTAGACGAGGTGAATGAAGAAGTGAAGCTGACGGGAGAGAAGACAACCGGCGGTGGTAGCACGCCGGAGAGATATGGAAAGGATGGTCCAGTGAAATCGGGCGACGGACGTGAAGTGAACGAATTAAATATTAGGGATTTGGGTTATAGGAAGTAAAAATTGCGAAGAAAATAGTGAACATTATAGATTATTGTTTGATGGAAACTAAGAATCTTTGTTATAAGAGCAACATGAAATATGCAGATTATTGGATAAAA

mRNA sequence

ATGGACAGGAAACGAGACAGTAGAAAGAAAGACCGAAAAAGGAGAGAACAGAGATTCGAAGTAGACGAGGTGAATGAAGAAGTGAAGCTGACGGGAGAGAAGACAACCGGCGGTGGTAGCACGCCGGAGAGATATGGAAAGGATGGTCCAGTGAAATCGGGCGACGGACGTGAAGTGAACGAATTAAATATTAGGGATTTGGGTTATAGGAAGTAA

Coding sequence (CDS)

ATGGACAGGAAACGAGACAGTAGAAAGAAAGACCGAAAAAGGAGAGAACAGAGATTCGAAGTAGACGAGGTGAATGAAGAAGTGAAGCTGACGGGAGAGAAGACAACCGGCGGTGGTAGCACGCCGGAGAGATATGGAAAGGATGGTCCAGTGAAATCGGGCGACGGACGTGAAGTGAACGAATTAAATATTAGGGATTTGGGTTATAGGAAGTAA

Protein sequence

MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVNELNIRDLGYRK*
Homology
[Close]
BLAST of Csa5G587230 vs. TrEMBL
Match: A0A0A0KTA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587230 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.2e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVN 60
          MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVN
Sbjct: 1  MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVN 60

Query: 61 ELNIRDLGYRK 72
          ELNIRDLGYRK
Sbjct: 61 ELNIRDLGYRK 71

[Close]
BLAST of Csa5G587230 vs. NCBI nr
Match: gi|700196475|gb|KGN51652.1| (hypothetical protein Csa_5G587230 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVN 60
          MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVN
Sbjct: 1  MDRKRDSRKKDRKRREQRFEVDEVNEEVKLTGEKTTGGGSTPERYGKDGPVKSGDGREVN 60

Query: 61 ELNIRDLGYRK 72
          ELNIRDLGYRK
Sbjct: 61 ELNIRDLGYRK 71

The following BLAST results are available for this feature:
BLAST of Csa5G587230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTA6_CUCSA6.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587230 PE=4 SV=1[more]
BLAST of Csa5G587230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196475|gb|KGN51652.1|8.9e-33100.00hypothetical protein Csa_5G587230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G587230.1Csa5G587230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G587230CSPI05G21090Wild cucumber (PI 183967)cpicuB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G587230Watermelon (Charleston Gray)cuwcgB352
Csa5G587230Watermelon (97103) v1cuwmB432
Csa5G587230Cucurbita pepo (Zucchini)cpecuB047
Csa5G587230Cucurbita pepo (Zucchini)cpecuB440
Csa5G587230Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G587230Cucumber (Gy14) v2cgybcuB223
Csa5G587230Melon (DHL92) v3.6.1cumedB359
Csa5G587230Silver-seed gourdcarcuB0148
Csa5G587230Silver-seed gourdcarcuB0713
Csa5G587230Watermelon (97103) v2cuwmbB357
Csa5G587230Wax gourdcuwgoB459
Csa5G587230Cucumber (Gy14) v1cgycuB073
Csa5G587230Cucurbita maxima (Rimu)cmacuB413
Csa5G587230Cucurbita maxima (Rimu)cmacuB749
Csa5G587230Cucurbita moschata (Rifu)cmocuB407
Csa5G587230Cucurbita moschata (Rifu)cmocuB739
Csa5G587230Melon (DHL92) v3.5.1cumeB377