Csa5G587200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G587200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCleavage and polyadenylation specificity factor subunit 3-I; contains IPR021718 (Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term)
LocationChr5 : 21041362 .. 21041778 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCGTGTGCATGACCGAGTAACCGTGAAGCAGGAATCAGAGAAACATGTCTCACTTCACTGGACATCCGACCCTTTAAGCGACATGGTATCAGATTCCGTGGTAGCACTCATTCTCAACATCAACCGCGAGGTTCCGAAAGTCATAGTGGAGTCGGAGGCTGTAAAAACAGAAGAAGAGAACGTGAAGAAAGCAGAGAAGGTAATTCATGCCCTGCTTGTTTCACTGTTCGGCGATGTGAAGTTAGGAGAGAATGGGAAGCTGGTGATTAACGTAGATGGGAATATAGCAGAGGTTGATAAACAAAGTGGTGAAGTAGAAAGTGAAAATGAAGCTCTCAAGGAAAGAGTTAAAACAGCATTTCAAAGAATTCAATGCGCTGTGAACCCAATTCCTCTTTCATCATCATCTTAG

mRNA sequence

ATGATTCGTGTGCATGACCGAGTAACCGTGAAGCAGGAATCAGAGAAACATGTCTCACTTCACTGGACATCCGACCCTTTAAGCGACATGGTATCAGATTCCGTGGTAGCACTCATTCTCAACATCAACCGCGAGGTTCCGAAAGTCATAGTGGAGTCGGAGGCTGTAAAAACAGAAGAAGAGAACGTGAAGAAAGCAGAGAAGGTAATTCATGCCCTGCTTGTTTCACTGTTCGGCGATGTGAAGTTAGGAGAGAATGGGAAGCTGGTGATTAACGTAGATGGGAATATAGCAGAGGTTGATAAACAAAGTGGTGAAGTAGAAAGTGAAAATGAAGCTCTCAAGGAAAGAGTTAAAACAGCATTTCAAAGAATTCAATGCGCTGTGAACCCAATTCCTCTTTCATCATCATCTTAG

Coding sequence (CDS)

ATGATTCGTGTGCATGACCGAGTAACCGTGAAGCAGGAATCAGAGAAACATGTCTCACTTCACTGGACATCCGACCCTTTAAGCGACATGGTATCAGATTCCGTGGTAGCACTCATTCTCAACATCAACCGCGAGGTTCCGAAAGTCATAGTGGAGTCGGAGGCTGTAAAAACAGAAGAAGAGAACGTGAAGAAAGCAGAGAAGGTAATTCATGCCCTGCTTGTTTCACTGTTCGGCGATGTGAAGTTAGGAGAGAATGGGAAGCTGGTGATTAACGTAGATGGGAATATAGCAGAGGTTGATAAACAAAGTGGTGAAGTAGAAAGTGAAAATGAAGCTCTCAAGGAAAGAGTTAAAACAGCATTTCAAAGAATTCAATGCGCTGTGAACCCAATTCCTCTTTCATCATCATCTTAG

Protein sequence

MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKTAFQRIQCAVNPIPLSSSS*
Homology
[Close]
BLAST of Csa5G587200 vs. Swiss-Prot
Match: CPSF3_ARATH (Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.6e-54
Identity = 105/137 (76.64%), Postives = 124/137 (90.51%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESE-AVKTEE 61
           ++VH+RVTVKQESEKH+SL W+SDP+SDMVSDS+VALILNI+REVPK+++E E AVK+EE
Sbjct: 557 LKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEE 616

Query: 62  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 121
           EN KK EKVI+ALLVSLFGDVKLGENGKLVI VDGN+A++DK+SGEVESE+  LKERV+ 
Sbjct: 617 ENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRV 676

Query: 122 AFQRIQCAVNPIPLSSS 138
           AF+RIQ AV PIPLS+S
Sbjct: 677 AFERIQSAVKPIPLSAS 693

[Close]
BLAST of Csa5G587200 vs. Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 43/140 (30.71%), Postives = 74/140 (52.86%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNI--NREVPKVIVESEAVKTE 61
           ++V   +TV QE    V L W ++P +DM +D+V  +IL +  N ++ K  V+  + K E
Sbjct: 548 LKVFKSITVVQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLE 607

Query: 62  EENVKKAEKVIHALLVSLFGD--VKLGENGKLVINVDGNIAEVDKQSGEVESE-----NE 121
                K  +V   +L  +FG+  V + ++  L + VDG  A ++ ++  VE E     +E
Sbjct: 608 MHVYSKRLEV---MLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSEDDE 667

Query: 122 ALKERVKTAFQRIQCAVNPI 133
           +L+E V+ A QR+  A+ P+
Sbjct: 668 SLREMVELAAQRLYEALTPV 683

[Close]
BLAST of Csa5G587200 vs. Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNI--NREVPKVIVESEAVKTE 61
           ++V   +TV QE    V L W ++P +DM +D+V  +IL +  N ++ K  V+  + K E
Sbjct: 548 LKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLE 607

Query: 62  EENVKKAEKVIHALLVSLFGD--VKLGENGKLVINVDGNIAEVDKQSGEVESE-----NE 121
                K  ++   +L  +FG+  V + +   L + VDG  A ++ ++  VE E     +E
Sbjct: 608 MHVYSKRLEI---MLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSEDDE 667

Query: 122 ALKERVKTAFQRIQCAVNPI 133
           +L+E V+ A QR+  A+ P+
Sbjct: 668 SLREMVELAAQRLYEALTPV 683

[Close]
BLAST of Csa5G587200 vs. Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNI--NREVPKVIVESEAVKTE 61
           ++V   +TV QE    V L W ++P +DM +D+V  +IL +  N ++ K  V+  + K E
Sbjct: 548 LKVFKNITVIQEPGM-VVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLE 607

Query: 62  EENVKKAEKVIHALLVSLFGD--VKLGENGKLVINVDGNIAEVDKQSGEVESE-----NE 121
                K  ++   +L  +FG+  V + ++  L + VDG  A ++ ++  VE E     +E
Sbjct: 608 MHVYSKRLEI---MLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSEDDE 667

Query: 122 ALKERVKTAFQRIQCAVNPI 133
           +L+E V+ A QR+  A+ P+
Sbjct: 668 SLREMVELAAQRLYEALTPV 683

[Close]
BLAST of Csa5G587200 vs. TrEMBL
Match: A0A0A0KV82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587170 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 545 MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 604

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 605 ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 664

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 665 AFQRIQCAVNPIPLSSSS 682

[Close]
BLAST of Csa5G587200 vs. TrEMBL
Match: A0A0A0KRY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587200 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 121 AFQRIQCAVNPIPLSSSS 138

[Close]
BLAST of Csa5G587200 vs. TrEMBL
Match: A0A061DZH0_THECC (Cleavage and polyadenylation specificity factor 73-I OS=Theobroma cacao GN=TCM_006944 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.8e-58
Identity = 113/136 (83.09%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEEE 61
           +RVHDRVTVKQ+S+KH+SLHWTSDP+SDMVSDS+VAL+LNI+RE+PKV+VESEAVK EEE
Sbjct: 559 LRVHDRVTVKQDSDKHISLHWTSDPISDMVSDSIVALVLNISREIPKVVVESEAVKMEEE 618

Query: 62  NVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKTA 121
           N KKAEKVIHALLVSLFGDVKLGENGKL+I+VDGN+A +DKQSG+VESENE LKERVKTA
Sbjct: 619 NGKKAEKVIHALLVSLFGDVKLGENGKLMISVDGNVAHLDKQSGDVESENEGLKERVKTA 678

Query: 122 FQRIQCAVNPIPLSSS 138
           F+RIQ AV PIPLS+S
Sbjct: 679 FRRIQSAVKPIPLSAS 694

[Close]
BLAST of Csa5G587200 vs. TrEMBL
Match: A0A0D2TUL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039200 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.2e-58
Identity = 111/136 (81.62%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEEE 61
           +RVHD VTVKQ+S++H+SLHWTSDP+SDMVSDS+VAL+LNI+RE+PKV+VESEA+KTEEE
Sbjct: 559 LRVHDSVTVKQDSDRHISLHWTSDPISDMVSDSIVALVLNISREIPKVVVESEAIKTEEE 618

Query: 62  NVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKTA 121
           N KKAEKVIHALLVSLFGDVKLGENGKL+++VDGN+A +DKQSG+VESENE LKERVKTA
Sbjct: 619 NGKKAEKVIHALLVSLFGDVKLGENGKLMVSVDGNVAHLDKQSGDVESENEGLKERVKTA 678

Query: 122 FQRIQCAVNPIPLSSS 138
           F+RIQ AV PIPLSSS
Sbjct: 679 FRRIQSAVKPIPLSSS 694

[Close]
BLAST of Csa5G587200 vs. TrEMBL
Match: V4SBP2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000468mg PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-57
Identity = 112/135 (82.96%), Postives = 129/135 (95.56%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEEE 61
           +RVHDRVT+KQ+SEKH+S+HWTSDP+SDMVSDSVVAL+LNINREVPKV+VESEA+K+EEE
Sbjct: 453 LRVHDRVTLKQDSEKHISMHWTSDPISDMVSDSVVALVLNINREVPKVVVESEAIKSEEE 512

Query: 62  NVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKTA 121
           + KKAEKVIHALLVSLFGDVKLG+NGK+VINVDGN+A +DKQSG+VESENE LKERVKTA
Sbjct: 513 SGKKAEKVIHALLVSLFGDVKLGDNGKVVINVDGNVAHLDKQSGDVESENEGLKERVKTA 572

Query: 122 FQRIQCAVNPIPLSS 137
           F RIQ AV PIPLS+
Sbjct: 573 FMRIQRAVKPIPLSA 587

[Close]
BLAST of Csa5G587200 vs. TAIR10
Match: AT1G61010.1 (AT1G61010.1 cleavage and polyadenylation specificity factor 73-I)

HSP 1 Score: 211.8 bits (538), Expect = 2.6e-55
Identity = 105/137 (76.64%), Postives = 124/137 (90.51%), Query Frame = 1 

Query: 2   IRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESE-AVKTEE 61
           ++VH+RVTVKQESEKH+SL W+SDP+SDMVSDS+VALILNI+REVPK+++E E AVK+EE
Sbjct: 557 LKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEE 616

Query: 62  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 121
           EN KK EKVI+ALLVSLFGDVKLGENGKLVI VDGN+A++DK+SGEVESE+  LKERV+ 
Sbjct: 617 ENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRV 676

Query: 122 AFQRIQCAVNPIPLSSS 138
           AF+RIQ AV PIPLS+S
Sbjct: 677 AFERIQSAVKPIPLSAS 693

[Close]
BLAST of Csa5G587200 vs. NCBI nr
Match: gi|778704517|ref|XP_011655548.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 556 MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 615

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 616 ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 675

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 676 AFQRIQCAVNPIPLSSSS 693

[Close]
BLAST of Csa5G587200 vs. NCBI nr
Match: gi|700196472|gb|KGN51649.1| (hypothetical protein Csa_5G587200 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 121 AFQRIQCAVNPIPLSSSS 138

[Close]
BLAST of Csa5G587200 vs. NCBI nr
Match: gi|778704530|ref|XP_011655552.1| (PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I-like [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 556 MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 615

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 616 ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 675

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 676 AFQRIQCAVNPIPLSSSS 693

[Close]
BLAST of Csa5G587200 vs. NCBI nr
Match: gi|700196469|gb|KGN51646.1| (hypothetical protein Csa_5G587170 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 545 MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 604

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 605 ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 664

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 665 AFQRIQCAVNPIPLSSSS 682

[Close]
BLAST of Csa5G587200 vs. NCBI nr
Match: gi|659131215|ref|XP_008465568.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I, partial [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 7.4e-68
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 60
           MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE
Sbjct: 480 MIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEE 539

Query: 61  ENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 120
           EN+KKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT
Sbjct: 540 ENMKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENEALKERVKT 599

Query: 121 AFQRIQCAVNPIPLSSSS 139
           AFQRIQCAVNPIPLSSSS
Sbjct: 600 AFQRIQCAVNPIPLSSSS 617

The following BLAST results are available for this feature:
BLAST of Csa5G587200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPSF3_ARATH4.6e-5476.64Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thali... [more]
CPSF3_MOUSE1.1e-0730.71Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cps... [more]
CPSF3_BOVIN2.5e-0730.00Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3... [more]
CPSF3_HUMAN3.3e-0730.00Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPS... [more]
BLAST of Csa5G587200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV82_CUCSA2.3e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587170 PE=4 SV=1[more]
A0A0A0KRY5_CUCSA2.3e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587200 PE=4 SV=1[more]
A0A061DZH0_THECC4.8e-5883.09Cleavage and polyadenylation specificity factor 73-I OS=Theobroma cacao GN=TCM_0... [more]
A0A0D2TUL9_GOSRA8.2e-5881.62Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039200 PE=4 SV=1[more]
V4SBP2_9ROSI1.4e-5782.96Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000468mg PE=4 SV=1[more]
BLAST of Csa5G587200 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G61010.12.6e-5576.64 cleavage and polyadenylation specificity factor 73-I[more]
BLAST of Csa5G587200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704517|ref|XP_011655548.1|3.3e-68100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cuc... [more]
gi|700196472|gb|KGN51649.1|3.3e-68100.00hypothetical protein Csa_5G587200 [Cucumis sativus][more]
gi|778704530|ref|XP_011655552.1|3.3e-68100.00PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor ... [more]
gi|700196469|gb|KGN51646.1|3.3e-68100.00hypothetical protein Csa_5G587170 [Cucumis sativus][more]
gi|659131215|ref|XP_008465568.1|7.4e-6899.28PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I, partial ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021718CPSF73-100_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU113149cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G587200.1Csa5G587200.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU113149CU113149transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021718Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-termPFAMPF11718CPSF73-100_Ccoord: 2..131
score: 3.4
NoneNo IPR availableunknownCoilCoilcoord: 97..117
scor
NoneNo IPR availablePANTHERPTHR11203CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTORcoord: 2..56
score: 1.8E-15coord: 80..106
score: 1.8
NoneNo IPR availablePANTHERPTHR11203:SF11CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 3coord: 80..106
score: 1.8E-15coord: 2..56
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G587200Cucurbita maxima (Rimu)cmacuB413
Csa5G587200Cucurbita maxima (Rimu)cmacuB749
Csa5G587200Cucurbita moschata (Rifu)cmocuB407
Csa5G587200Cucurbita moschata (Rifu)cmocuB739
Csa5G587200Melon (DHL92) v3.5.1cumeB377
Csa5G587200Watermelon (Charleston Gray)cuwcgB352
Csa5G587200Watermelon (97103) v1cuwmB432
Csa5G587200Cucurbita pepo (Zucchini)cpecuB047
Csa5G587200Cucurbita pepo (Zucchini)cpecuB440
Csa5G587200Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G587200Cucumber (Gy14) v2cgybcuB223
Csa5G587200Melon (DHL92) v3.6.1cumedB359
Csa5G587200Silver-seed gourdcarcuB0148
Csa5G587200Silver-seed gourdcarcuB0713
Csa5G587200Watermelon (97103) v2cuwmbB357
Csa5G587200Wax gourdcuwgoB459
Csa5G587200Cucumber (Gy14) v1cgycuB073