Csa5G587080 (gene) Cucumber (Chinese Long) v2

NameCsa5G587080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionVascular protein
LocationChr5 : 20980674 .. 20981138 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATATATGAAAACAGATGATGGTTCTATACCTTCAATTGTTGCTGATCATATCGGTGTTTACCTTGGCTCAGTTAAAGGTAGAGGCAGTATCGTTGAAGTAGTAAGTGAGGTCAGCCTGGTCAAGTCTTTTGCACCCGCTGGTGGAAATGTTGATGCCACTGCGCTTCAAACACCTTTAGCAAAATCCATTTCTAATAAATCCAAGGCATCTTCTGATGGTGACTCGAAGGATAATTTGATGGGTCTGGAAACTCTTATGAAACAAAGTTCAGCCGCTGCAGATGAACAGGCTAATGCAGAAGAAAAGTTCAAGAAAACGTTGTATGGTACTGCTAATGATGGTAGCAGTAGTGATGAAGAGGATGTTTCAAAAACTCGAAAGCTACACATTAGAATACTAGATAAACCAGTTACATCTCCCACAGTTGATGTGAAAAAGATTAAAATTGGGAAAGATTAA

mRNA sequence

ATGCCATATATGAAAACAGATGATGGTTCTATACCTTCAATTGTTGCTGATCATATCGGTGTTTACCTTGGCTCAGTTAAAGGTAGAGGCAGTATCGTTGAAGTAGTAAGTGAGGTCAGCCTGGTCAAGTCTTTTGCACCCGCTGGTGGAAATGTTGATGCCACTGCGCTTCAAACACCTTTAGCAAAATCCATTTCTAATAAATCCAAGGCATCTTCTGATGGTGACTCGAAGGATAATTTGATGGGTCTGGAAACTCTTATGAAACAAAGTTCAGCCGCTGCAGATGAACAGGCTAATGCAGAAGAAAAGTTCAAGAAAACGTTGTATGGTACTGCTAATGATGGTAGCAGTAGTGATGAAGAGGATGTTTCAAAAACTCGAAAGCTACACATTAGAATACTAGATAAACCAGTTACATCTCCCACAGTTGATGTGAAAAAGATTAAAATTGGGAAAGATTAA

Coding sequence (CDS)

ATGCCATATATGAAAACAGATGATGGTTCTATACCTTCAATTGTTGCTGATCATATCGGTGTTTACCTTGGCTCAGTTAAAGGTAGAGGCAGTATCGTTGAAGTAGTAAGTGAGGTCAGCCTGGTCAAGTCTTTTGCACCCGCTGGTGGAAATGTTGATGCCACTGCGCTTCAAACACCTTTAGCAAAATCCATTTCTAATAAATCCAAGGCATCTTCTGATGGTGACTCGAAGGATAATTTGATGGGTCTGGAAACTCTTATGAAACAAAGTTCAGCCGCTGCAGATGAACAGGCTAATGCAGAAGAAAAGTTCAAGAAAACGTTGTATGGTACTGCTAATGATGGTAGCAGTAGTGATGAAGAGGATGTTTCAAAAACTCGAAAGCTACACATTAGAATACTAGATAAACCAGTTACATCTCCCACAGTTGATGTGAAAAAGATTAAAATTGGGAAAGATTAA

Protein sequence

MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTPLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSDEEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD*
BLAST of Csa5G587080 vs. TrEMBL
Match: A0A0A0KT94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587080 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.1e-78
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1

Query: 1   MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
           MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP
Sbjct: 1   MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60

Query: 61  LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD 120
           LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD
Sbjct: 61  LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD 120

Query: 121 EEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD 155
           EEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD
Sbjct: 121 EEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD 154

BLAST of Csa5G587080 vs. TrEMBL
Match: A0A0A0LLY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285390 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.6e-70
Identity = 143/151 (94.70%), Postives = 146/151 (96.69%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVD-ATALQT 60
            MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSE SLVKSFAPAGGNVD AT LQT
Sbjct: 1031 MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAPAGGNVDKATGLQT 1090

Query: 61   PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSS 120
            PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQA AEE+FKKT+YGTANDGSSS
Sbjct: 1091 PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQAKAEEEFKKTMYGTANDGSSS 1150

Query: 121  DEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            DEE+VSKTRKLHIRI DKPVTSPTVDVKKIK
Sbjct: 1151 DEENVSKTRKLHIRIRDKPVTSPTVDVKKIK 1181

BLAST of Csa5G587080 vs. TrEMBL
Match: U5G8C1_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0007s11290g PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.5e-47
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
            MPYMKTDDG+IP+I+ DHIGVYLGS+KGRG++VEV  E SLVK+F PAG N     L   
Sbjct: 1032 MPYMKTDDGTIPAIITDHIGVYLGSIKGRGNVVEV-REDSLVKAFIPAGDN-KPNGLPNA 1091

Query: 61   LAKSISNKSKASSDGDSK-DNLMGLETLMKQS--SAAADEQANAEEKFKKTLYGTANDGS 120
            LAKSISNKS    DG  K D+L+GLETL KQ+  ++AADEQA AEE+FKKT+YGTANDGS
Sbjct: 1092 LAKSISNKSNGLPDGHMKLDSLLGLETLTKQNAGTSAADEQAKAEEEFKKTMYGTANDGS 1151

Query: 121  SSDEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            SSDEE VSKT+KL IRI DKPV+S TVDV KIK
Sbjct: 1152 SSDEEGVSKTKKLQIRIRDKPVSSTTVDVNKIK 1182

BLAST of Csa5G587080 vs. TrEMBL
Match: U5G528_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11290g PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.5e-47
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
            MPYMKTDDG+IP+I+ DHIGVYLGS+KGRG++VEV  E SLVK+F PAG N     L   
Sbjct: 1009 MPYMKTDDGTIPAIITDHIGVYLGSIKGRGNVVEV-REDSLVKAFIPAGDN-KPNGLPNA 1068

Query: 61   LAKSISNKSKASSDGDSK-DNLMGLETLMKQS--SAAADEQANAEEKFKKTLYGTANDGS 120
            LAKSISNKS    DG  K D+L+GLETL KQ+  ++AADEQA AEE+FKKT+YGTANDGS
Sbjct: 1069 LAKSISNKSNGLPDGHMKLDSLLGLETLTKQNAGTSAADEQAKAEEEFKKTMYGTANDGS 1128

Query: 121  SSDEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            SSDEE VSKT+KL IRI DKPV+S TVDV KIK
Sbjct: 1129 SSDEEGVSKTKKLQIRIRDKPVSSTTVDVNKIK 1159

BLAST of Csa5G587080 vs. TrEMBL
Match: F6HD91_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0783g00010 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.2e-46
Identity = 106/152 (69.74%), Postives = 118/152 (77.63%), Query Frame = 1

Query: 1   MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
           MPYMKTDDGSIPSI+ADHIGVYLGS+KGRG+IVEV  E SLVK F PAGGN+    L T 
Sbjct: 91  MPYMKTDDGSIPSIIADHIGVYLGSIKGRGNIVEV-REDSLVKPFTPAGGNIKENGLHTS 150

Query: 61  LAKSISNKSKASSDGDSKDNLMGLETLMKQ--SSAAADEQANAEEKFKKTLYGTANDGSS 120
           LAKS+SNKSK    GDS   LMGLETL +Q   S +ADEQA A E+FKK+LYG + DGSS
Sbjct: 151 LAKSMSNKSKEVQAGDS---LMGLETLTQQVSGSTSADEQAKAAEEFKKSLYGASADGSS 210

Query: 121 SDEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
           SDEE VSK +KL IRI DKPVTS  +DV KIK
Sbjct: 211 SDEEGVSKPKKLQIRIRDKPVTSAALDVNKIK 238

BLAST of Csa5G587080 vs. TAIR10
Match: AT3G50590.1 (AT3G50590.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-33
Identity = 85/150 (56.67%), Postives = 103/150 (68.67%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
            MPYMK +DG+IPSIVADHIGVYLG VKGR ++VE+  E SLV    P G ++        
Sbjct: 1038 MPYMKNEDGTIPSIVADHIGVYLGCVKGRVNVVEI-KEDSLVSK--PGGLSL-------- 1097

Query: 61   LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD 120
            L K +S+K  A   G+S  ++MGLE+L KQ+   ADEQA A E+FKKT+YG   DGSSSD
Sbjct: 1098 LGKPVSDKPLALPAGESS-SMMGLESLGKQN--VADEQAKAAEEFKKTMYGATGDGSSSD 1157

Query: 121  EEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            EE V+K +KL IRI +KP TS TVDV K+K
Sbjct: 1158 EEGVTKPKKLQIRIREKP-TSTTVDVNKLK 1172

BLAST of Csa5G587080 vs. NCBI nr
Match: gi|700196460|gb|KGN51637.1| (hypothetical protein Csa_5G587080 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 8.8e-78
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1

Query: 1   MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
           MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP
Sbjct: 1   MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60

Query: 61  LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD 120
           LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD
Sbjct: 61  LAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSSD 120

Query: 121 EEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD 155
           EEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD
Sbjct: 121 EEDVSKTRKLHIRILDKPVTSPTVDVKKIKIGKD 154

BLAST of Csa5G587080 vs. NCBI nr
Match: gi|778670027|ref|XP_011649345.1| (PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 5.1e-70
Identity = 143/151 (94.70%), Postives = 146/151 (96.69%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVD-ATALQT 60
            MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSE SLVKSFAPAGGNVD AT LQT
Sbjct: 1031 MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAPAGGNVDKATGLQT 1090

Query: 61   PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQANAEEKFKKTLYGTANDGSSS 120
            PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQA AEE+FKKT+YGTANDGSSS
Sbjct: 1091 PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSAAADEQAKAEEEFKKTMYGTANDGSSS 1150

Query: 121  DEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            DEE+VSKTRKLHIRI DKPVTSPTVDVKKIK
Sbjct: 1151 DEENVSKTRKLHIRIRDKPVTSPTVDVKKIK 1181

BLAST of Csa5G587080 vs. NCBI nr
Match: gi|659115939|ref|XP_008457818.1| (PREDICTED: uncharacterized protein LOC103497411 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-68
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVD-ATALQT 60
            MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVS+ SLVKSFAPAGGNVD AT LQT
Sbjct: 1031 MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSDDSLVKSFAPAGGNVDKATGLQT 1090

Query: 61   PLAKSISNKSKASSDGDSKDNLMGLETLMKQ--SSAAADEQANAEEKFKKTLYGTANDGS 120
            PLAKSISNKSKASSDGDSKDNLMGLETLMKQ  SSAAADEQA AEE+FKKT+YGTANDGS
Sbjct: 1091 PLAKSISNKSKASSDGDSKDNLMGLETLMKQSSSSAAADEQAKAEEEFKKTMYGTANDGS 1150

Query: 121  SSDEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            SSDEE+VSKTRKLHIRI DKPVTSPTVDVKKIK
Sbjct: 1151 SSDEENVSKTRKLHIRIRDKPVTSPTVDVKKIK 1183

BLAST of Csa5G587080 vs. NCBI nr
Match: gi|1009114118|ref|XP_015873512.1| (PREDICTED: uncharacterized protein LOC107410579 [Ziziphus jujuba])

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 110/153 (71.90%), Postives = 123/153 (80.39%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
            MPYMKTD+G+IPS++ADHIGVYLGS+KGRG+IVEV  E SLV++ APAGG+     LQT 
Sbjct: 985  MPYMKTDEGTIPSVIADHIGVYLGSIKGRGNIVEV-REDSLVRALAPAGGDNKPNGLQTI 1044

Query: 61   LAKSISNKSKASSDGDSK-DNLMGLETLMKQ--SSAAADEQANAEEKFKKTLYGTANDGS 120
              KSIS KSK   DGDSK D+LMGLETL KQ  SS AADEQA AEE+FKKT+YG + DGS
Sbjct: 1045 PGKSISVKSKEVLDGDSKGDSLMGLETLTKQFASSGAADEQAKAEEEFKKTMYGASADGS 1104

Query: 121  SSDEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            SSDEE VSK RKLHIRI DKPV S TVDV KIK
Sbjct: 1105 SSDEEGVSKARKLHIRIRDKPVGSTTVDVNKIK 1136

BLAST of Csa5G587080 vs. NCBI nr
Match: gi|566180761|ref|XP_006380719.1| (transducin family protein [Populus trichocarpa])

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-46
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 1

Query: 1    MPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEVSLVKSFAPAGGNVDATALQTP 60
            MPYMKTDDG+IP+I+ DHIGVYLGS+KGRG++VEV  E SLVK+F PAG N     L   
Sbjct: 1032 MPYMKTDDGTIPAIITDHIGVYLGSIKGRGNVVEV-REDSLVKAFIPAGDN-KPNGLPNA 1091

Query: 61   LAKSISNKSKASSDGDSK-DNLMGLETLMKQS--SAAADEQANAEEKFKKTLYGTANDGS 120
            LAKSISNKS    DG  K D+L+GLETL KQ+  ++AADEQA AEE+FKKT+YGTANDGS
Sbjct: 1092 LAKSISNKSNGLPDGHMKLDSLLGLETLTKQNAGTSAADEQAKAEEEFKKTMYGTANDGS 1151

Query: 121  SSDEEDVSKTRKLHIRILDKPVTSPTVDVKKIK 151
            SSDEE VSKT+KL IRI DKPV+S TVDV KIK
Sbjct: 1152 SSDEEGVSKTKKLQIRIRDKPVSSTTVDVNKIK 1182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KT94_CUCSA6.1e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587080 PE=4 SV=1[more]
A0A0A0LLY5_CUCSA3.6e-7094.70Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285390 PE=4 SV=1[more]
U5G8C1_POPTR9.5e-4769.93Transducin family protein OS=Populus trichocarpa GN=POPTR_0007s11290g PE=4 SV=1[more]
U5G528_POPTR9.5e-4769.93Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11290g PE=4 SV=1[more]
F6HD91_VITVI6.2e-4669.74Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0783g00010 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G50590.12.4e-3356.67 Transducin/WD40 repeat-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700196460|gb|KGN51637.1|8.8e-78100.00hypothetical protein Csa_5G587080 [Cucumis sativus][more]
gi|778670027|ref|XP_011649345.1|5.1e-7094.70PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus][more]
gi|659115939|ref|XP_008457818.1|3.7e-6892.81PREDICTED: uncharacterized protein LOC103497411 [Cucumis melo][more]
gi|1009114118|ref|XP_015873512.1|1.2e-4771.90PREDICTED: uncharacterized protein LOC107410579 [Ziziphus jujuba][more]
gi|566180761|ref|XP_006380719.1|1.4e-4669.93transducin family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU130285cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G587080.1Csa5G587080.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU130285CU130285transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 84..104
scor
NoneNo IPR availablePANTHERPTHR19878AUTOPHAGY PROTEIN 16-LIKEcoord: 1..150
score: 1.8
NoneNo IPR availablePANTHERPTHR19878:SF4TRANSDUCIN/WD40 DOMAIN-CONTAINING PROTEINcoord: 1..150
score: 1.8

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G587080Cucsa.076040Cucumber (Gy14) v1cgycuB073
Csa5G587080CsGy5G020630Cucumber (Gy14) v2cgybcuB223
The following gene(s) are paralogous to this gene:

None