Csa5G515040 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G515040
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 18014144 .. 18014399 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACAAAATGGAAAGTCTTAGTTATTATTGAAGAAGATGAATTGTTATTTATTGTTAGATATTGTCCTACGTTTTGTTGGCGGGAGCAGCGGCGGCGTTGGGTTCAAGCATAGATTTGAAGGCGAATATGAGCGAATGGAGCTCGTTTTTTGACCAAGGCAATGCAGCTGCTGCGCTTCTTCTTCTTGCATTTTTATGTAGTGCTATCATTTCTGTACTTTCTTCTTTAGCTCTTTCTAACAAACCTAATTAG

mRNA sequence

ATGATATTGTCCTACGTTTTGTTGGCGGGAGCAGCGGCGGCGTTGGGTTCAAGCATAGATTTGAAGGCGAATATGAGCGAATGGAGCTCGTTTTTTGACCAAGGCAATGCAGCTGCTGCGCTTCTTCTTCTTGCATTTTTATGTAGTGCTATCATTTCTGTACTTTCTTCTTTAGCTCTTTCTAACAAACCTAATTAG

Coding sequence (CDS)

ATGATATTGTCCTACGTTTTGTTGGCGGGAGCAGCGGCGGCGTTGGGTTCAAGCATAGATTTGAAGGCGAATATGAGCGAATGGAGCTCGTTTTTTGACCAAGGCAATGCAGCTGCTGCGCTTCTTCTTCTTGCATTTTTATGTAGTGCTATCATTTCTGTACTTTCTTCTTTAGCTCTTTCTAACAAACCTAATTAG

Protein sequence

MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLALSNKPN*

Homology

[Close]

BLAST of Csa5G515040 vs. Swiss-Prot
Match: CSPLL_POPTR (CASP-like protein 4D1 OS=Populus trichocarpa GN=POPTR_0010s21230g PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-08
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSEWSS--FFDQGNAAAALLLLAFLCSAIISVLSSLA 61
           ++SY+L  GAAAA G++ +LK  ++      FF++G A+A+LLLL F+C+AI+SV SS A
Sbjct: 113 VVSYILATGAAAAFGATKELKTQLAGLGGDKFFNKGYASASLLLLGFVCTAILSVFSSYA 172

Query: 62  LSNK 64
           L  K
Sbjct: 173 LPKK 176

[Close]

BLAST of Csa5G515040 vs. Swiss-Prot
Match: CSPLE_RICCO (CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMS---EWSSFFDQGNAAAALLLLAFLCSAIISVLSSL 61
           ++SY+L+ GAAA   S+ D+K   S   ++ +F ++G A+A+LLL+ F+C+A++SV SS 
Sbjct: 103 VISYILVTGAAAGFASTKDIKPVFSGSGDFDAFINKGYASASLLLIGFVCTAVLSVFSSY 162

[Close]

BLAST of Csa5G515040 vs. Swiss-Prot
Match: CSPLK_ARALL (CASP-like protein 4D1 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_903205 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-07
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKAN---MSEWSS------FFDQGNAAAALLLLAFLCSAII 61
           I+SY+L  G+AA  G S DLK     + E+ S      FF +G A+A+LLL AF+  A++
Sbjct: 103 IISYLLATGSAAGFGVSKDLKETFLALIEFDSTDPVDKFFSKGYASASLLLFAFVSLAVL 162

Query: 62  SVLSSLALSNKP 65
           SV SSLALS +P
Sbjct: 163 SVFSSLALSKRP 174

[Close]

BLAST of Csa5G515040 vs. Swiss-Prot
Match: CSPLC_ARATH (CASP-like protein 4D1 OS=Arabidopsis thaliana GN=At2g39530 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-07
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKAN---MSEWSS------FFDQGNAAAALLLLAFLCSAII 61
           ++SY+L  G+AA  G S DLK     + E+ S      FF +G A+A+LLL AF+  A++
Sbjct: 103 VISYLLATGSAAGFGVSKDLKDTYIALIEFDSTDPVDKFFSKGYASASLLLFAFVSLAVL 162

Query: 62  SVLSSLALSNKP 65
           SV SSLALS +P
Sbjct: 163 SVFSSLALSKRP 174

[Close]

BLAST of Csa5G515040 vs. Swiss-Prot
Match: CSPLC_SOYBN (CASP-like protein 4D1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-06
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLALS 61
           I+SY+L++G+AA  G +++L   +   +SF D+ NA+A+LLL+AFL +A+ S  +S AL 
Sbjct: 108 IISYLLISGSAAGFGVTVELGRGVPS-NSFMDKANASASLLLIAFLFTAVASTFTSFALP 167

Query: 62  NK 64
            K
Sbjct: 168 KK 168

[Close]

BLAST of Csa5G515040 vs. TrEMBL
Match: A0A0A0KQW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G515040 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLAL 60
          MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLAL
Sbjct: 1  MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLAL 60

Query: 61 SNKPN 66
          SNKPN
Sbjct: 61 SNKPN 65

[Close]

BLAST of Csa5G515040 vs. TrEMBL
Match: A0A0A0KS88_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_5G515020 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-13
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMS------EWSSFFDQGNAAAALLLLAFLCSAIISVL 61
           +L+Y+LL+ A+A LGS IDL+AN+       ++SSFFD+GNA +A+L LAF+CSAI+SVL
Sbjct: 95  LLTYLLLSAASAGLGSGIDLRANIKVLVDGDDYSSFFDKGNAGSAILFLAFICSAIVSVL 154

Query: 62  SSLALSNKP 65
           SSLAL  KP
Sbjct: 155 SSLALIKKP 163

[Close]

BLAST of Csa5G515040 vs. TrEMBL
Match: A0A0A0KNU7_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_5G515030 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-10
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSE------WSSFFDQGNAAAALLLLAFLCSAIISVL 61
           +L+Y+LL+GA+A LG+ IDL+ N+ E      ++SFFD+ NA +A+LLLAF+C+AI+SVL
Sbjct: 96  LLTYLLLSGASAGLGAGIDLRVNIKELLEGTYFNSFFDKANAGSAILLLAFVCAAIVSVL 155

[Close]

BLAST of Csa5G515040 vs. TrEMBL
Match: D7TLT6_VITVI (CASP-like protein OS=Vitis vinifera GN=VIT_13s0019g01390 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLALS 61
           ++SYVL  G  AA G++IDLK   S  + FF++G+AAA+LLLLAFL +A+ SV SSLAL 
Sbjct: 98  VISYVLATGVGAAFGATIDLKEASSGANKFFNKGSAAASLLLLAFLFTAVSSVFSSLALP 157

Query: 62  NK 64
            K
Sbjct: 158 KK 159

[Close]

BLAST of Csa5G515040 vs. TrEMBL
Match: A0A0D2UY23_GOSRA (CASP-like protein OS=Gossypium raimondii GN=B456_011G257400 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-07
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKA-----NMSEWSSFFDQGNAAAALLLLAFLCSAIISVLS 61
           ++SYVL  G+AA  G++ DLKA     N+ +   +FD+  A+A+LLL AF+C+AI+SVLS
Sbjct: 108 VISYVLATGSAAGFGATKDLKALADVTNVDDLDDYFDKAYASASLLLFAFICAAILSVLS 167

Query: 62  SLALSNKPN 66
           S AL    N
Sbjct: 168 SYALPKMVN 176

[Close]

BLAST of Csa5G515040 vs. TAIR10
Match: AT2G39530.1 (AT2G39530.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKAN---MSEWSS------FFDQGNAAAALLLLAFLCSAII 61
           ++SY+L  G+AA  G S DLK     + E+ S      FF +G A+A+LLL AF+  A++
Sbjct: 103 VISYLLATGSAAGFGVSKDLKDTYIALIEFDSTDPVDKFFSKGYASASLLLFAFVSLAVL 162

Query: 62  SVLSSLALSNKP 65
           SV SSLALS +P
Sbjct: 163 SVFSSLALSKRP 174

[Close]

BLAST of Csa5G515040 vs. TAIR10
Match: AT2G39518.1 (AT2G39518.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANM---------SEWSSFFDQGNAAAALLLLAFLCSAII 61
           ++SY++  G+AA  G + DLK                 FF +G A+A+LLL AF+C A++
Sbjct: 103 LISYLVATGSAAGFGVTKDLKDTFLALVALDSTDPVDKFFSKGYASASLLLFAFICLAVL 162

Query: 62  SVLSSLALSNK 64
           SV SS A++ +
Sbjct: 163 SVFSSFAMAKR 173

[Close]

BLAST of Csa5G515040 vs. NCBI nr
Match: gi|700196122|gb|KGN51299.1| (hypothetical protein Csa_5G515040 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLAL 60
          MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLAL
Sbjct: 1  MILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLAL 60

Query: 61 SNKPN 66
          SNKPN
Sbjct: 61 SNKPN 65

[Close]

BLAST of Csa5G515040 vs. NCBI nr
Match: gi|659117979|ref|XP_008458887.1| (PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-21
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSEWSSFFDQGNAAAALLLLAFLCSAIISVLSSLALS 61
           +LSY LLAGAAAALGSS+DLKANM   +SFFDQGNAAAALLLLAFLCSAIISVLSSLALS
Sbjct: 91  VLSYFLLAGAAAALGSSVDLKANMDMLNSFFDQGNAAAALLLLAFLCSAIISVLSSLALS 150

Query: 62  NKPN 66
           NKPN
Sbjct: 151 NKPN 154

[Close]

BLAST of Csa5G515040 vs. NCBI nr
Match: gi|449450002|ref|XP_004142753.1| (PREDICTED: CASP-like protein 4D1 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMS------EWSSFFDQGNAAAALLLLAFLCSAIISVL 61
           +L+Y+LL+ A+A LGS IDL+AN+       ++SSFFD+GNA +A+L LAF+CSAI+SVL
Sbjct: 95  LLTYLLLSAASAGLGSGIDLRANIKVLVDGDDYSSFFDKGNAGSAILFLAFICSAIVSVL 154

Query: 62  SSLALSNKP 65
           SSLAL  KP
Sbjct: 155 SSLALIKKP 163

[Close]

BLAST of Csa5G515040 vs. NCBI nr
Match: gi|659117983|ref|XP_008458889.1| (PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-11
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSE------WSSFFDQGNAAAALLLLAFLCSAIISVL 61
           +L+Y+LL+GA+A  G+ IDLK N+ E      + SFF++GNA +A+LLLAF+C+AI+S+L
Sbjct: 95  LLAYLLLSGASAGFGAGIDLKVNIKELLESNYYDSFFNEGNAGSAILLLAFICAAIVSLL 154

Query: 62  SSLALSNKP 65
           SSLAL   P
Sbjct: 155 SSLALIRNP 163

[Close]

BLAST of Csa5G515040 vs. NCBI nr
Match: gi|700196121|gb|KGN51298.1| (hypothetical protein Csa_5G515030 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 2   ILSYVLLAGAAAALGSSIDLKANMSE------WSSFFDQGNAAAALLLLAFLCSAIISVL 61
           +L+Y+LL+GA+A LG+ IDL+ N+ E      ++SFFD+ NA +A+LLLAF+C+AI+SVL
Sbjct: 96  LLTYLLLSGASAGLGAGIDLRVNIKELLEGTYFNSFFDKANAGSAILLLAFVCAAIVSVL 155

The following BLAST results are available for this feature:

BLAST of Csa5G515040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSPLL_POPTR	1.4e-08	48.44	CASP-like protein 4D1 OS=Populus trichocarpa GN=POPTR_0010s21230g PE=2 SV=2	[more]
CSPLE_RICCO	2.6e-07	43.55	CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1	[more]
CSPLK_ARALL	3.4e-07	47.22	CASP-like protein 4D1 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_903205 P...	[more]
CSPLC_ARATH	5.9e-07	45.83	CASP-like protein 4D1 OS=Arabidopsis thaliana GN=At2g39530 PE=2 SV=1	[more]
CSPLC_SOYBN	1.0e-06	43.55	CASP-like protein 4D1 OS=Glycine max PE=2 SV=1	[more]

BLAST of Csa5G515040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQW8_CUCSA	1.1e-25	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G515040 PE=4 SV=1	[more]
A0A0A0KS88_CUCSA	8.5e-13	59.42	CASP-like protein OS=Cucumis sativus GN=Csa_5G515020 PE=3 SV=1	[more]
A0A0A0KNU7_CUCSA	1.0e-10	56.92	CASP-like protein OS=Cucumis sativus GN=Csa_5G515030 PE=3 SV=1	[more]
D7TLT6_VITVI	1.7e-08	56.45	CASP-like protein OS=Vitis vinifera GN=VIT_13s0019g01390 PE=3 SV=1	[more]
A0A0D2UY23_GOSRA	2.4e-07	47.83	CASP-like protein OS=Gossypium raimondii GN=B456_011G257400 PE=3 SV=1	[more]

BLAST of Csa5G515040 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39530.1	3.3e-08	45.83	Uncharacterised protein family (UPF0497)	[more]
AT2G39518.1	1.8e-06	36.62	Uncharacterised protein family (UPF0497)	[more]

BLAST of Csa5G515040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196122\|gb\|KGN51299.1\|	1.6e-25	100.00	hypothetical protein Csa_5G515040 [Cucumis sativus]	[more]
gi\|659117979\|ref\|XP_008458887.1\|	5.5e-21	89.06	PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo]	[more]
gi\|449450002\|ref\|XP_004142753.1\|	1.2e-12	59.42	PREDICTED: CASP-like protein 4D1 [Cucumis sativus]	[more]
gi\|659117983\|ref\|XP_008458889.1\|	5.1e-11	53.62	PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo]	[more]
gi\|700196121\|gb\|KGN51298.1\|	1.5e-10	56.92	hypothetical protein Csa_5G515030 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU120094	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G515040.1	Csa5G515040.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU120094	CU120094	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33573	FAMILY NOT NAMED	coord: 1..65 score: 7.1
None	No IPR available	PANTHER	PTHR33573:SF5	SUBFAMILY NOT NAMED	coord: 1..65 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G515040	Cucurbita pepo (Zucchini)	cpecuB176
Csa5G515040	Cucurbita pepo (Zucchini)	cpecuB417
Csa5G515040	Bottle gourd (USVL1VR-Ls)	culsiB342
Csa5G515040	Bottle gourd (USVL1VR-Ls)	culsiB347
Csa5G515040	Bottle gourd (USVL1VR-Ls)	culsiB366
Csa5G515040	Cucumber (Gy14) v2	cgybcuB179
Csa5G515040	Cucumber (Gy14) v2	cgybcuB223
Csa5G515040	Cucumber (Gy14) v2	cgybcuB228
Csa5G515040	Melon (DHL92) v3.6.1	cumedB338
Csa5G515040	Melon (DHL92) v3.6.1	cumedB355
Csa5G515040	Melon (DHL92) v3.6.1	cumedB399
Csa5G515040	Silver-seed gourd	carcuB0294
Csa5G515040	Silver-seed gourd	carcuB0707
Csa5G515040	Watermelon (97103) v2	cuwmbB370
Csa5G515040	Watermelon (97103) v2	cuwmbB374
Csa5G515040	Watermelon (97103) v2	cuwmbB407
Csa5G515040	Cucumber (Chinese Long) v2	cucuB137
Csa5G515040	Cucumber (Chinese Long) v2	cucuB157
Csa5G515040	Cucumber (Gy14) v1	cgycuB057
Csa5G515040	Cucumber (Gy14) v1	cgycuB252
Csa5G515040	Cucumber (Gy14) v1	cgycuB286
Csa5G515040	Cucurbita maxima (Rimu)	cmacuB300
Csa5G515040	Cucurbita maxima (Rimu)	cmacuB725
Csa5G515040	Cucurbita maxima (Rimu)	cmacuB754
Csa5G515040	Cucurbita moschata (Rifu)	cmocuB288
Csa5G515040	Cucurbita moschata (Rifu)	cmocuB716
Csa5G515040	Cucurbita moschata (Rifu)	cmocuB862
Csa5G515040	Melon (DHL92) v3.5.1	cumeB342
Csa5G515040	Melon (DHL92) v3.5.1	cumeB360
Csa5G515040	Melon (DHL92) v3.5.1	cumeB412
Csa5G515040	Watermelon (Charleston Gray)	cuwcgB338
Csa5G515040	Watermelon (Charleston Gray)	cuwcgB382
Csa5G515040	Watermelon (Charleston Gray)	cuwcgB386
Csa5G515040	Watermelon (Charleston Gray)	cuwcgB405
Csa5G515040	Watermelon (97103) v1	cuwmB363
Csa5G515040	Watermelon (97103) v1	cuwmB394
Csa5G515040	Watermelon (97103) v1	cuwmB424