Csa5G466340 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G466340
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 16318468 .. 16320781 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTTATATTTAGGTTGGTTTCTGCATTCGCAGCTTCGGTGAAATTTCGGATTTGGCAAACGTTGGGGGTAATTGACTTGGGAATAAATTTGCTTGCTTTTTGGGCTCAGTCTCGAGGTAAGTAAGTTTACTACCGGAATATTTTTTAGCATCCTAGTTTAGATAAATTGTTACGCCGTATAGGTTGTAGAAGCATGCCATGTGATGTTTGAGATAATTGGCTATGTTAGTGTGGATGAGAAGATTGTTATGAGCATGTTGAACTCTATGTATTACAGTAAAATGTATGTAGTATGAAATCATGATGGTTGCTACGATGTATGAAGGGAATGAGTAATATGTAGGTGTGAACTTTGATTTATGACATGGTTCCCGTTGAAAATATGTTGCATGTTAGTTAAGTTCGTGATGATCTACCCTCCTATCAGTTAATGCTATCATGTATGACTGTAAATCGTTGGGTTCACTACCACATTATGACTGTGAGCCGATGGGTGGGTTCACGTTCACCACAATGTATCATTCTGTGCCTTCCAGCCACCAGTTATGTGTGATAGAATGGGATAGATTATTCACTTAGATGACCATCGAAGATCAATTATAGTATACATGTTCATTAGTATGAATGCACAGCCTGACCCAGCACTGGAGTTTCTTTGAAGTTAATGTGTACTTAACGTGAAGAAGCTCTTTTAAAACTACCTAGTTTAGTTACTGTGATGAAGGAGGGAAGCTAAGTAGTTTGAAAAAGGGGCCTTAGACATAAAGTGAAAAAGAAAGCTTCTTGAGTTTTTCTGTCTTACCAAATATCTATGAGGAAAAGAAAAAGTATCTAGAAAAGATTTTATTATTTTGAGAAGATGAAGGAAATTAATGTTTTGAGACTACCAGTACATAAGTTTAGTTTGACTTTCTAACATGGGATTTGGATCTGTTTGAAGTCGGTATAAGTAATCTGGTTACTTCTTGGAACTTTGGATCTTCACATGTGTTGGTTCAATAACTAACTTGCTTAGGCTATTGGTCATGGAACCCAACCTTAGCCTGAGAATCTTCTTCTTAAAATAAAGATTAAGCAGTAACAATCAAGTGTTGGAGGTGTGTTTGGTAAGCTTCAAATTATAGAGTAGTTGAAGGAAAAAAAATCTTTTAGGTGGAGTTGTAAGTAAGTAACAACAGTCTTTTAGAAGCTATTGAAATGGAAGGTTAGGGTTTGTTATTAAAAAGTCAGTTATTGAAGGTATCAACAAGGTTTAAGAGACTTTCATTTTGGCGCACAAATTAGAACATGAAACTAGTGAAGCCATCAATTTGATTTAAAGGTGGATGTAATCTAGTTCAAAGTGAAGATTCAGTTCTATGGGTGTTAAGGTCAAATAAGTTAACTTTTCAATATGATCTCTAGCACAAGAGATGAACTTGAGAATAAAGCACTTGCATTAATAAGGCTGATTATAAATCAGTTCTAACAGAGTTGAATATCAAGTCGATACATGAACTGTTTGACATGGTTTTCTTACGTCCTGATCTTTTGTCTTAAGTGCTCACATTTTGTTCATTAGGGAAGAAAGAAGGATAAATGCAACTTTTTCAACTATCAAGAGTTGTTATGGTAGCATAGCCAGGTTGCAGGCAATGCGGGGGAATGTGGGTCCATTAGGTACCAAATCTAGATTCTGAATCTTGGGCTTAGGGTGCTATGGATAGTATGCTCTCTCTTGCATGGGCAATAAGTTGATCAACTCTATGGAGATGAATATTCTCAATATGGATTTATGAGTTGGGATTATTTTTATTTTAAAGGCTATCTTAAAAAACTAGTTACAGTTGGTTATGGGGATGTGTTTGGAAAGAAGTTCTAATGAATAATATCTCAAAAATCTGCTTATTAACTAAAGGAACATGGAAAGGCTATAACCAATCTTTTAAAACAACCAAAGACTAAAAAGTCGAAGCCACACACAGTTGGTTTGAACAACACAAGGATACATCAGATTAAGCGAGTGTTTGGATCGACTTTCTAAGTGTTTATAACTACAAAAAAAAGTTTATAAATACTTGGAAAGTCAATCCAAATGTGCCCTAATTTGTTTTTTTCCTTTAGAAAAAAACTAGATTTAAATTCAAATTCAAATTTATTTCAAATTTCTTGGTTTTTTTTTTGTGCTGATAAAGTTATTTCAAATTTGCATATCATGTTAATCTTTTATTTGTTGTTTTTTTTTTGTAGATGAGAATCAAAAAACAAAAGCGGCAACGGAGAGCTGTGAGATTCTACACTACATGCTGTGGATTCAGGCCACCTTTTAA

mRNA sequence

ATGTGGTTTATATTTAGGTTGGTTTCTGCATTCGCAGCTTCGGTGAAATTTCGGATTTGGCAAACGTTGGGGGTAATTGACTTGGGAATAAATTTGCTTGCTTTTTGGGCTCAGTCTCGAGATGAGAATCAAAAAACAAAAGCGGCAACGGAGAGCTGTGAGATTCTACACTACATGCTGTGGATTCAGGCCACCTTTTAA

Coding sequence (CDS)

ATGTGGTTTATATTTAGGTTGGTTTCTGCATTCGCAGCTTCGGTGAAATTTCGGATTTGGCAAACGTTGGGGGTAATTGACTTGGGAATAAATTTGCTTGCTTTTTGGGCTCAGTCTCGAGATGAGAATCAAAAAACAAAAGCGGCAACGGAGAGCTGTGAGATTCTACACTACATGCTGTGGATTCAGGCCACCTTTTAA

Protein sequence

MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYMLWIQATF*
Homology
[Close]
BLAST of Csa5G466340 vs. TrEMBL
Match: A0A0A0KRV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G466340 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYML 60
          MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYML
Sbjct: 1  MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYML 60

Query: 61 WIQATF 67
          WIQATF
Sbjct: 61 WIQATF 66

[Close]
BLAST of Csa5G466340 vs. NCBI nr
Match: gi|700195960|gb|KGN51137.1| (hypothetical protein Csa_5G466340 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYML 60
          MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYML
Sbjct: 1  MWFIFRLVSAFAASVKFRIWQTLGVIDLGINLLAFWAQSRDENQKTKAATESCEILHYML 60

Query: 61 WIQATF 67
          WIQATF
Sbjct: 61 WIQATF 66

The following BLAST results are available for this feature:
BLAST of Csa5G466340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRV2_CUCSA3.5e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G466340 PE=4 SV=1[more]
BLAST of Csa5G466340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195960|gb|KGN51137.1|5.0e-30100.00hypothetical protein Csa_5G466340 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094035cucumber EST collection version 3.0transcribed_cluster
CU142727cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G466340.1Csa5G466340.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU094035CU094035transcribed_cluster
CU142727CU142727transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G466340Bottle gourd (USVL1VR-Ls)culsiB324
Csa5G466340Cucumber (Gy14) v2cgybcuB223
Csa5G466340Melon (DHL92) v3.6.1cumedB341
Csa5G466340Silver-seed gourdcarcuB0510
Csa5G466340Silver-seed gourdcarcuB0843
Csa5G466340Watermelon (97103) v2cuwmbB338
Csa5G466340Wax gourdcuwgoB454
Csa5G466340Cucumber (Gy14) v1cgycuB005
Csa5G466340Cucurbita maxima (Rimu)cmacuB303
Csa5G466340Cucurbita maxima (Rimu)cmacuB728
Csa5G466340Cucurbita moschata (Rifu)cmocuB291
Csa5G466340Cucurbita moschata (Rifu)cmocuB720
Csa5G466340Melon (DHL92) v3.5.1cumeB363
Csa5G466340Watermelon (Charleston Gray)cuwcgB366
Csa5G466340Watermelon (97103) v1cuwmB410
Csa5G466340Cucurbita pepo (Zucchini)cpecuB179
Csa5G466340Cucurbita pepo (Zucchini)cpecuB421