Csa5G431520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G431520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 15673056 .. 15673565 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGGTGACATTTTCTCAAGTTATTCTTCTTCTTCTTCTTCTTCCTTCCCATTTCTTTCTTTTGGTTTTCTGTCTCTGTATTAAAAATTATTTGCTGAGATGAGACACTCTCTTTTACTTGTCAGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGTTGTTTCTCTCCTTTTTTGTTTTTCTGCATTGTTTGATCAATTTTTTGCTTTTAGCCATTGATATGCTTTTAGGTGTTTCAGCTTCAAGTTTTGTTGTTGGCTGTTGTTTTGAATTTTGTGTGAAGTTCTCTAATTAATTTAGCTGATTATTATTCAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

mRNA sequence

ATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGGTGACATTTTCTCAAGTTATTCTTCTTCTTCTTCTTCTTCCTTCCCATTTCTTTCTTTTGGTTTTCTACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

Coding sequence (CDS)

ATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGGTGACATTTTCTCAAGTTATTCTTCTTCTTCTTCTTCTTCCTTCCCATTTCTTTCTTTTGGTTTTCTACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

Protein sequence

MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFLRYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR*

Homology

[Close]

BLAST of Csa5G431520 vs. TrEMBL
Match: A0A0A0KQE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G431520 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.0e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFL 60
          MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFL
Sbjct: 1  MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFL 60

Query: 61 RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 99
          RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR
Sbjct: 61 RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 98

[Close]

BLAST of Csa5G431520 vs. NCBI nr
Match: gi|700195907|gb|KGN51084.1| (hypothetical protein Csa_5G431520 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 4.3e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFL 60
          MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFL
Sbjct: 1  MLLSQQRGSFLFPTISNVVCHRQSSPTVHLRNSSSAVGDIFSSYSSSSSSSFPFLSFGFL 60

Query: 61 RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 99
          RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR
Sbjct: 61 RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 98

[Close]

BLAST of Csa5G431520 vs. NCBI nr
Match: gi|659118792|ref|XP_008459309.1| (PREDICTED: protease Do-like 8, chloroplastic [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 64 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 99
          SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 41 SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 75

[Close]

BLAST of Csa5G431520 vs. NCBI nr
Match: gi|449461957|ref|XP_004148708.1| (PREDICTED: protease Do-like 8, chloroplastic [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 64 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 99
          SSSQPS S PST ESIFIQRRADDDSG LGSVV+R
Sbjct: 41 SSSQPSTSSPSTSESIFIQRRADDDSGDLGSVVNR 75

The following BLAST results are available for this feature:

BLAST of Csa5G431520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQE1_CUCSA	3.0e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G431520 PE=4 SV=1	[more]

BLAST of Csa5G431520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195907\|gb\|KGN51084.1\|	4.3e-46	100.00	hypothetical protein Csa_5G431520 [Cucumis sativus]	[more]
gi\|659118792\|ref\|XP_008459309.1\|	1.5e-06	88.57	PREDICTED: protease Do-like 8, chloroplastic [Cucumis melo]	[more]
gi\|449461957\|ref\|XP_004148708.1\|	4.4e-06	85.71	PREDICTED: protease Do-like 8, chloroplastic [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G431520.1	Csa5G431520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G431520	Cucsa.330610	Cucumber (Gy14) v1	cgycuB467

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G431520	Cucurbita maxima (Rimu)	cmacuB303
Csa5G431520	Cucurbita maxima (Rimu)	cmacuB728
Csa5G431520	Cucurbita moschata (Rifu)	cmocuB291
Csa5G431520	Cucurbita moschata (Rifu)	cmocuB720
Csa5G431520	Melon (DHL92) v3.5.1	cumeB363
Csa5G431520	Watermelon (Charleston Gray)	cuwcgB366
Csa5G431520	Watermelon (97103) v1	cuwmB410
Csa5G431520	Cucurbita pepo (Zucchini)	cpecuB179
Csa5G431520	Cucurbita pepo (Zucchini)	cpecuB421
Csa5G431520	Bottle gourd (USVL1VR-Ls)	culsiB324
Csa5G431520	Cucumber (Gy14) v2	cgybcuB223
Csa5G431520	Melon (DHL92) v3.6.1	cumedB341
Csa5G431520	Silver-seed gourd	carcuB0510
Csa5G431520	Silver-seed gourd	carcuB0843
Csa5G431520	Watermelon (97103) v2	cuwmbB338