Csa5G430520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G430520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 15649617 .. 15649961 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCGAGCTATCGAACAAGACCCAACCAAAATGTTCACCGCGAACTATCCTACACACATAAGCCCATTTGACTACATCAGCGCAAAAGTCTTTCCCGTCGAACACACCGACCCATCTTCCAAATGTGGCAGCCCAATTCCTTCACAACTGGGCCTAATAGATACACTAGATGCGCGGTCACCCGGTTCAACCCCAAATTGTCGCCCAACCCGGTTCGCACTTGATGCGAAGTTCGAAAGTAAGTCACTGCTTACCGTCGCCTTTCAAGCCTTCACCGCCACATCGTGCACACGTTTTAGTCCAACCAGTGCACGTTGCTTCACTACCGAGGTGTCACCAGACTGA

mRNA sequence

ATGTTCACCGCGAACTATCCTACACACATAAGCCCATTTGACTACATCAGCGCAAAAGTCTTTCCCGTCGAACACACCGACCCATCTTCCAAATGTGGCAGCCCAATTCCTTCACAACTGGGCCTAATAGATACACTAGATGCGCGGTCACCCGGTTCAACCCCAAATTGTCGCCCAACCCGGTTCGCACTTGATGCGAAGTTCGAAAGTAAGTCACTGCTTACCGTCGCCTTTCAAGCCTTCACCGCCACATCGTGCACACGTTTTAGTCCAACCAGTGCACGTTGCTTCACTACCGAGGTGTCACCAGACTGA

Coding sequence (CDS)

ATGTTCACCGCGAACTATCCTACACACATAAGCCCATTTGACTACATCAGCGCAAAAGTCTTTCCCGTCGAACACACCGACCCATCTTCCAAATGTGGCAGCCCAATTCCTTCACAACTGGGCCTAATAGATACACTAGATGCGCGGTCACCCGGTTCAACCCCAAATTGTCGCCCAACCCGGTTCGCACTTGATGCGAAGTTCGAAAGTAAGTCACTGCTTACCGTCGCCTTTCAAGCCTTCACCGCCACATCGTGCACACGTTTTAGTCCAACCAGTGCACGTTGCTTCACTACCGAGGTGTCACCAGACTGA

Protein sequence

MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPTRFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD*

Homology

[Close]

BLAST of Csa5G430520 vs. TrEMBL
Match: A0A0A0KRR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G430520 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPT 60
           MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPT
Sbjct: 1   MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPT 60

Query: 61  RFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD 105
           RFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD
Sbjct: 61  RFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD 104

[Close]

BLAST of Csa5G430520 vs. NCBI nr
Match: gi|700195905|gb|KGN51082.1| (hypothetical protein Csa_5G430520 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 1.7e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPT 60
           MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPT
Sbjct: 1   MFTANYPTHISPFDYISAKVFPVEHTDPSSKCGSPIPSQLGLIDTLDARSPGSTPNCRPT 60

Query: 61  RFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD 105
           RFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD
Sbjct: 61  RFALDAKFESKSLLTVAFQAFTATSCTRFSPTSARCFTTEVSPD 104

The following BLAST results are available for this feature:

BLAST of Csa5G430520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR3_CUCSA	1.2e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G430520 PE=4 SV=1	[more]

BLAST of Csa5G430520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195905\|gb\|KGN51082.1\|	1.7e-53	100.00	hypothetical protein Csa_5G430520 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G430520.1	Csa5G430520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G430520	Watermelon (Charleston Gray)	cuwcgB366
Csa5G430520	Watermelon (97103) v1	cuwmB410
Csa5G430520	Cucurbita pepo (Zucchini)	cpecuB179
Csa5G430520	Cucurbita pepo (Zucchini)	cpecuB421
Csa5G430520	Bottle gourd (USVL1VR-Ls)	culsiB324
Csa5G430520	Cucumber (Gy14) v2	cgybcuB223
Csa5G430520	Silver-seed gourd	carcuB0510
Csa5G430520	Silver-seed gourd	carcuB0843
Csa5G430520	Watermelon (97103) v2	cuwmbB338
Csa5G430520	Cucurbita maxima (Rimu)	cmacuB303
Csa5G430520	Cucurbita maxima (Rimu)	cmacuB728
Csa5G430520	Cucurbita moschata (Rifu)	cmocuB291
Csa5G430520	Cucurbita moschata (Rifu)	cmocuB720