Csa5G346540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G346540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Armadillo repeat-containing protein; contains IPR016024 (Armadillo-type fold)
Location	Chr5 : 13290567 .. 13292305 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTAAATTTATTTAATTCTTTTCAGTCATGGATTTATGTCTAGTGAATTGCAAAATGTTATGTTTCTTTTGTTAGAAACTCAAAAAGCTGAGAGTTTGCATTGTTTCTCTTGAACCCACAGAAACAAAAGAAAGTCTTGTTGCAAATTTGGCAAACTTTTCTTATGATCCTTACAATTATTCCTTCTTACGCCAGGTATTAAATCTCTACTTTTGATATTACTGTGCTTTGTTTCAGAGCTTCTCCATAGATGTTTGCCTACTTATCCCCTTCTCTAAAACAATTTTACTGAATTGTAATTTTGTGAGCAGCTAAATGTTCTGGAGCTTTTTTTGGACTGCATGACAGAGCCAAATGAGAAGCTTATTGAATTTGGTATTGGAGGGATCTGCAATTCTTGTGTTGGTGTGATTTTGGAATTTGAACCTTGGGTTGTTTCATAATTTAAAATTTATTTGATTTAGATGTGAGTGCTGTTTGTTCTACCTATTGGATGACTAACTGACCACTGATACATCTACTGTTACTTTTTTCATGCAGACCCTGCTAATGCTTCTATTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAAAAAACACTGTAAGTTGAGAACCTTGTGCGTGTTTGCTTCTTGTCAGGTTTTCAGTTTTTGGTTCATAAAAGGCATTACCCAAAAAGTTTTTTGAGAAAAATAATGACGGGCCCTGCTGTATGAAAATTAACTTTTGGTAACTTTAACTAAAATTTTAAACATGATTCAGCATTCTTTTTCTTTTCGTTTAGTAAGAGTACTCATAGGAATATCTTTAGAACAGTAATAAGGATCTTTGTAAGGGTATAGTGGTAAGTAATTAGCTGAAGTCTTGGTTACAAATAGAGGTAGTAGATATGTTTAAGGGAAAGCCATATTTTGATGGGTCAGTCCATAGTGGGTGGATTGGAAGAAGATAGCCCATTCAAAAGGCTTCTAGATATTGTAGGTTGTTTTTTATATTGCATTATATTAGCATCATGTCTTTTCTGTGCTTGGATACCCAACACATTCTTTTGATCAAATATCGAATTTCAATGTATTTTTTCCCTTGGATATGCATGATGTTTCTATCATTTGCATATATATGGAAGCCTTGACTAGAGAAAATTGATATGTTGATCTAGTCCAATGTATCTCCAGTTGATTTTTTCTAAAGGATCTACTAATATCTCTACAAAATCATCTGATAAATGGATCATTTTTACTATTCTGTCAAATTGGTATCCCCTGTGGTTGAATCAGTGATTGATATTCCCTTTGGTTTTGGTCAAAATAAAGTGTCAAACTTATTTCAGTTTGAGGTGAATCATGCAGTTAGCTTCCTTTTTGTATTTTGTGGAGGTACATTAGTGCACAGAGCATGTGTAGAATTTAGCCACAGTTGAAAATCCATTCACTCGTGGCAAACTTAACAATTCTTATCAGGTGAATTATGCACTGGGCGCTATATATTACCTCTGCAATGCATCAAACAAGGAAGAGATTATGAAACCAGAAGTTGTAGATGTCATCAACAAATACGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTGGCTAAAGCAATTCTGGACAAGCACCTATCTAACAGAAACTGAAACTTGACATCCTTGATGGCAAATTGGCTGAAATCTCATTGCTAGGTTTGCTCGTTCTTCTTCTCTTTATTCTTTTATGAT

mRNA sequence

ATGGGGAAACTCAAAAAGCTGAGAGTTTGCATTGTTTCTCTTGAACCCACAGAAACAAAAGAAAGTCTTGTTGCAAATTTGGCAAACTTTTCTTATGATCCTTACAATTATTCCTTCTTACGCCAGCTAAATGTTCTGGAGCTTTTTTTGGACTGCATGACAGAGCCAAATGAGAAGCTTATTGAATTTGGTATTGGAGGGATCTGCAATTCTTGTGTTGACCCTGCTAATGCTTCTATTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAAAAAACACTGTGAATTATGCACTGGGCGCTATATATTACCTCTGCAATGCATCAAACAAGGAAGAGATTATGAAACCAGAAGTTGTAGATGTCATCAACAAATACGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTGGCTAAAGCAATTCTGGACAAGCACCTATCTAACAGAAACTGA

Coding sequence (CDS)

ATGGGGAAACTCAAAAAGCTGAGAGTTTGCATTGTTTCTCTTGAACCCACAGAAACAAAAGAAAGTCTTGTTGCAAATTTGGCAAACTTTTCTTATGATCCTTACAATTATTCCTTCTTACGCCAGCTAAATGTTCTGGAGCTTTTTTTGGACTGCATGACAGAGCCAAATGAGAAGCTTATTGAATTTGGTATTGGAGGGATCTGCAATTCTTGTGTTGACCCTGCTAATGCTTCTATTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAAAAAACACTGTGAATTATGCACTGGGCGCTATATATTACCTCTGCAATGCATCAAACAAGGAAGAGATTATGAAACCAGAAGTTGTAGATGTCATCAACAAATACGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTGGCTAAAGCAATTCTGGACAAGCACCTATCTAACAGAAACTGA

Protein sequence

MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN*

Homology

[Close]

BLAST of Csa5G346540 vs. Swiss-Prot
Match: ARMC7_MOUSE (Armadillo repeat-containing protein 7 OS=Mus musculus GN=Armc7 PE=1 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 5.3e-30
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 1


Query: 1   MGKLKKLRVCIVSLEPTET---KESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPN 60
           +G+L  L+  +   + TE+   KE ++ANLANF+YDP NY +LRQL VL+LFLD ++E N
Sbjct: 11  VGRLGYLQALVTEFQETESQDAKEQVLANLANFAYDPGNYQYLRQLQVLDLFLDSLSEEN 70

Query: 61  EKLIEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASN 120
           E LI+F IGG+CN C D AN   + Q GG+PLII CLSSP + TV  A+  + YL +  +
Sbjct: 71  ETLIKFAIGGLCNLCADKANKEHVLQAGGLPLIIGCLSSPDEETVLSAVTTLMYLSSPGS 130

Query: 121 KE--EIMKPEVVDVINKYAVAESVSFSNLAKAILDKHLS 155
           +   E+    VV  + +++++ S    NLA+  L+   S
Sbjct: 131 RSHPELTSLPVVQCMLRFSISASTRLRNLAQIFLEDFCS 169

[Close]

BLAST of Csa5G346540 vs. Swiss-Prot
Match: ARMC7_HUMAN (Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 69/161 (42.86%), Postives = 97/161 (60.25%), Query Frame = 1


Query: 1   MGKLKKLRVCIVSLEPTET---KESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPN 60
           +G+L  L+  +   + T++   KE ++ANLANF+YDP NY +LRQL VL+LFLD ++E N
Sbjct: 11  VGRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEEN 70

Query: 61  EKLIEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLC--NA 120
           E L+EF IGG+CN C D AN   I   GG+PLII CLSSP + TV  A+  + +L     
Sbjct: 71  ETLVEFAIGGLCNLCPDRANKEHILHAGGVPLIINCLSSPNEETVLSAITTLMHLSPPGR 130

Query: 121 SNKEEIMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNR 157
           S   E+    VV  + +++++ S    NLA+  L+   S R
Sbjct: 131 SFLPELTATPVVQCMLRFSLSASARLRNLAQIFLEDFCSPR 171

[Close]

BLAST of Csa5G346540 vs. TrEMBL
Match: A0A0A0KT79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G346540 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.2e-83
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL 60
           MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL
Sbjct: 1   MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL 60

Query: 61  IEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEE 120
           IEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEE
Sbjct: 61  IEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEE 120

Query: 121 IMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN 158
           IMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN
Sbjct: 121 IMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN 157

[Close]

BLAST of Csa5G346540 vs. TrEMBL
Match: W9QTS3_9ROSA (Armadillo repeat-containing protein 7 OS=Morus notabilis GN=L484_022936 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 117/155 (75.48%), Postives = 136/155 (87.74%), Query Frame = 1


Query: 4   LKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEF 63
           L++L   I +    ETKE LVANLANF+YDPYNY+FLRQLNVLELFLDC TEPNEKL+EF
Sbjct: 23  LQELVTQIQNSNNEETKERLVANLANFAYDPYNYTFLRQLNVLELFLDCSTEPNEKLVEF 82

Query: 64  GIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMK 123
           GIGG+CNSC DP NA+IITQCGGIPL+++CLSSPV+NTVNYALGA+YYLCN SN EEI+K
Sbjct: 83  GIGGVCNSCADPENATIITQCGGIPLVVQCLSSPVRNTVNYALGALYYLCNKSNSEEILK 142

Query: 124 PEVVDVINKYAVAE--SVSFSNLAKAILDKHLSNR 157
           PEVVD+IN+YA AE  SVSFSNLAKA L+KH+S +
Sbjct: 143 PEVVDLINRYAAAEAVSVSFSNLAKAFLEKHVSEK 177

[Close]

BLAST of Csa5G346540 vs. TrEMBL
Match: A0A0B0NG84_GOSAR (Armadillo repeat-containing 7 OS=Gossypium arboreum GN=F383_19673 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 115/139 (82.73%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKE + ANLANF+YDPYNYSFLRQLNVLELFLDC+TEPNEKL+EFGIGGICNSCVDPAN
Sbjct: 37  ETKEKIAANLANFAYDPYNYSFLRQLNVLELFLDCITEPNEKLMEFGIGGICNSCVDPAN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           A+IITQCGGIPL+I+CLSSPV+NTVNYALGA+YYLCN SN+EEI+KPEV+DVI +YA A+
Sbjct: 97  AAIITQCGGIPLVIKCLSSPVRNTVNYALGALYYLCNKSNREEILKPEVIDVIERYAAAQ 156

Query: 138 SV--SFSNLAKAILDKHLS 155
           +V  SFSNLAKA LDKHL+
Sbjct: 157 TVNASFSNLAKAFLDKHLT 175

[Close]

BLAST of Csa5G346540 vs. TrEMBL
Match: A0A0D2QNY0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G113600 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 115/139 (82.73%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKE + ANLANF+YDPYNYSFLRQLNVLELFLDC+TEPNEKL+EFGIGGICNSCVDPAN
Sbjct: 37  ETKEKIAANLANFAYDPYNYSFLRQLNVLELFLDCITEPNEKLMEFGIGGICNSCVDPAN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           A+IITQCGGIPL+I+CLSSPV+NTVNYALGA+YYLCN SN+EEI+KPEV+DVI +YA A+
Sbjct: 97  AAIITQCGGIPLVIKCLSSPVRNTVNYALGALYYLCNKSNREEILKPEVIDVIERYAAAQ 156

Query: 138 SV--SFSNLAKAILDKHLS 155
           +V  SFSNLAKA LDKH+S
Sbjct: 157 TVNASFSNLAKAFLDKHVS 175

[Close]

BLAST of Csa5G346540 vs. TrEMBL
Match: A0A061GWN2_THECC (ARM repeat superfamily protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_041735 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.3e-61
Identity = 113/139 (81.29%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKE + ANLANF+YDPYNYSFLRQLNVLEL+LDC+TEPNEKL+EFGIGGICNSCVDPAN
Sbjct: 22  ETKEKIAANLANFAYDPYNYSFLRQLNVLELYLDCLTEPNEKLVEFGIGGICNSCVDPAN 81

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           A+I+TQC GIPL+I+CLSSPV+NTVNYALGA+YYLCN SN+EEI+KPEVVDVI +YA A+
Sbjct: 82  AAILTQCDGIPLVIQCLSSPVRNTVNYALGALYYLCNKSNREEILKPEVVDVIERYAAAQ 141

Query: 138 --SVSFSNLAKAILDKHLS 155
             +VSFSNLAKA LDKH+S
Sbjct: 142 TVNVSFSNLAKAFLDKHVS 160

[Close]

BLAST of Csa5G346540 vs. TAIR10
Match: AT5G37290.1 (AT5G37290.1 ARM repeat superfamily protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54
Identity = 100/140 (71.43%), Postives = 119/140 (85.00%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKE +VANLANF+YDPYNY+ LRQLNVLELF+DC+TEPNEKL+EFGIGGICN+C +P N
Sbjct: 37  ETKERIVANLANFAYDPYNYTILRQLNVLELFVDCITEPNEKLVEFGIGGICNACAEPKN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLC--NASNKEEIMKPEVVDVINKYAV 137
            + I +  GIPLII+ LSSPV+NTVNYALGA+YY+C  N + +EEI++PEVVD+I +YA 
Sbjct: 97  VATIVEADGIPLIIKSLSSPVRNTVNYALGALYYMCDYNRATREEILRPEVVDLIERYAA 156

Query: 138 AE--SVSFSNLAKAILDKHL 154
           AE  SVSFSNLAKA LDKH+
Sbjct: 157 AESVSVSFSNLAKAFLDKHV 176

[Close]

BLAST of Csa5G346540 vs. NCBI nr
Match: gi|700195749|gb|KGN50926.1| (hypothetical protein Csa_5G346540 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.2e-83
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL 60
           MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL
Sbjct: 1   MGKLKKLRVCIVSLEPTETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL 60

Query: 61  IEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEE 120
           IEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEE
Sbjct: 61  IEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEE 120

Query: 121 IMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN 158
           IMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN
Sbjct: 121 IMKPEVVDVINKYAVAESVSFSNLAKAILDKHLSNRN 157

[Close]

BLAST of Csa5G346540 vs. NCBI nr
Match: gi|778702150|ref|XP_011655143.1| (PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 2.3e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN
Sbjct: 37  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE
Sbjct: 97  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 156

Query: 138 SVSFSNLAKAILDKHLSNRN 158
           SVSFSNLAKAILDKHLSNRN
Sbjct: 157 SVSFSNLAKAILDKHLSNRN 176

[Close]

BLAST of Csa5G346540 vs. NCBI nr
Match: gi|659126344|ref|XP_008463134.1| (PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKE LVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL+EFGIGGICNSCVDPAN
Sbjct: 37  ETKERLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLVEFGIGGICNSCVDPAN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVIN+YAVAE
Sbjct: 97  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINRYAVAE 156

Query: 138 SVSFSNLAKAILDKHLSNRN 158
           SVSFSNLAKAILDKHLSNRN
Sbjct: 157 SVSFSNLAKAILDKHLSNRN 176

[Close]

BLAST of Csa5G346540 vs. NCBI nr
Match: gi|778702159|ref|XP_011655146.1| (PREDICTED: armadillo repeat-containing protein 7 isoform X2 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.3e-64
Identity = 130/140 (92.86%), Postives = 130/140 (92.86%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEF          DPAN
Sbjct: 37  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEF----------DPAN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE
Sbjct: 97  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 156

Query: 138 SVSFSNLAKAILDKHLSNRN 158
           SVSFSNLAKAILDKHLSNRN
Sbjct: 157 SVSFSNLAKAILDKHLSNRN 166

[Close]

BLAST of Csa5G346540 vs. NCBI nr
Match: gi|659126356|ref|XP_008463140.1| (PREDICTED: armadillo repeat-containing protein 7 isoform X2 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.6e-63
Identity = 127/140 (90.71%), Postives = 129/140 (92.14%), Query Frame = 1


Query: 18  ETKESLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLIEFGIGGICNSCVDPAN 77
           ETKE LVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKL+EF          DPAN
Sbjct: 37  ETKERLVANLANFSYDPYNYSFLRQLNVLELFLDCMTEPNEKLVEF----------DPAN 96

Query: 78  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINKYAVAE 137
           ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVIN+YAVAE
Sbjct: 97  ASIITQCGGIPLIIECLSSPVKNTVNYALGAIYYLCNASNKEEIMKPEVVDVINRYAVAE 156

Query: 138 SVSFSNLAKAILDKHLSNRN 158
           SVSFSNLAKAILDKHLSNRN
Sbjct: 157 SVSFSNLAKAILDKHLSNRN 166

The following BLAST results are available for this feature:

BLAST of Csa5G346540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARMC7_MOUSE	5.3e-30	43.40	Armadillo repeat-containing protein 7 OS=Mus musculus GN=Armc7 PE=1 SV=2	[more]
ARMC7_HUMAN	1.0e-28	42.86	Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1	[more]

BLAST of Csa5G346540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT79_CUCSA	2.2e-83	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G346540 PE=4 SV=1	[more]
W9QTS3_9ROSA	8.2e-62	75.48	Armadillo repeat-containing protein 7 OS=Morus notabilis GN=L484_022936 PE=4 SV=...	[more]
A0A0B0NG84_GOSAR	8.2e-62	82.73	Armadillo repeat-containing 7 OS=Gossypium arboreum GN=F383_19673 PE=4 SV=1	[more]
A0A0D2QNY0_GOSRA	8.2e-62	82.73	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G113600 PE=4 SV=1	[more]
A0A061GWN2_THECC	5.3e-61	81.29	ARM repeat superfamily protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_04...	[more]

BLAST of Csa5G346540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37290.1	1.9e-54	71.43	ARM repeat superfamily protein	[more]

BLAST of Csa5G346540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195749\|gb\|KGN50926.1\|	3.2e-83	100.00	hypothetical protein Csa_5G346540 [Cucumis sativus]	[more]
gi\|778702150\|ref\|XP_011655143.1\|	2.3e-73	100.00	PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Cucumis sativus]	[more]
gi\|659126344\|ref\|XP_008463134.1\|	2.5e-72	97.86	PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Cucumis melo]	[more]
gi\|778702159\|ref\|XP_011655146.1\|	3.3e-64	92.86	PREDICTED: armadillo repeat-containing protein 7 isoform X2 [Cucumis sativus]	[more]
gi\|659126356\|ref\|XP_008463140.1\|	3.6e-63	90.71	PREDICTED: armadillo repeat-containing protein 7 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000225	Armadillo
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0006102	isocitrate metabolic process
biological_process	GO:0019643	reductive tricarboxylic acid cycle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005488	binding
molecular_function	GO:0004450	isocitrate dehydrogenase (NADP+) activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU112557	cucumber EST collection version 3.0	transcribed_cluster
CU119372	cucumber EST collection version 3.0	transcribed_cluster
CU122789	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G346540.1	Csa5G346540.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU119372	CU119372	transcribed_cluster
CU112557	CU112557	transcribed_cluster
CU122789	CU122789	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000225	Armadillo	PFAM	PF00514	Arm	coord: 75..113 score: 1.
IPR000225	Armadillo	SMART	SM00185	arm_5	coord: 33..73 score: 54.0coord: 74..114 score: 0.
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 17..128 score: 1.3
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 17..134 score: 6.1
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 17..157 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G346540	Cla009131	Watermelon (97103) v1	cuwmB412
Csa5G346540	MELO3C025074	Melon (DHL92) v3.5.1	cumeB352
Csa5G346540	ClCG01G008580	Watermelon (Charleston Gray)	cuwcgB367
Csa5G346540	Lsi09G009000	Bottle gourd (USVL1VR-Ls)	culsiB325
Csa5G346540	Cla97C01G008860	Watermelon (97103) v2	cuwmbB339
Csa5G346540	Bhi12G001039	Wax gourd	cuwgoB441
Csa5G346540	CSPI05G13660	Wild cucumber (PI 183967)	cpicuB239
Csa5G346540	CmaCh15G007630	Cucurbita maxima (Rimu)	cmacuB304
Csa5G346540	CmoCh15G007930	Cucurbita moschata (Rifu)	cmocuB292
Csa5G346540	Cp4.1LG13g05430	Cucurbita pepo (Zucchini)	cpecuB180
Csa5G346540	CsGy5G013580	Cucumber (Gy14) v2	cgybcuB223
Csa5G346540	Carg01441	Silver-seed gourd	carcuB0844

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G346540	Melon (DHL92) v3.6.1	cumedB332
Csa5G346540	Silver-seed gourd	carcuB0557
Csa5G346540	Silver-seed gourd	carcuB0847
Csa5G346540	Cucurbita maxima (Rimu)	cmacuB297
Csa5G346540	Cucurbita maxima (Rimu)	cmacuB731
Csa5G346540	Cucurbita moschata (Rifu)	cmocuB285
Csa5G346540	Cucurbita moschata (Rifu)	cmocuB722
Csa5G346540	Cucurbita pepo (Zucchini)	cpecuB193
Csa5G346540	Cucurbita pepo (Zucchini)	cpecuB423