Csa5G321500 (gene) Cucumber (Chinese Long) v2

NameCsa5G321500
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 13040440 .. 13041393 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAGAAGTTCCTGCCCTCGTAGCTGCCCCCGTAGCGGTTATGGAGTCTCTTTACCATATAGCTCTATCATACGACCAATAGGTGTTCACAACACTATATTACGGGAGAGGAATCATTCTTCGACCGCTCCTCTTGAGTCTTATTCCACTAATTAACCACCCACCAGGTCTCATTCTCTCTTTGCCAAGGAGGGCCTCCAACTCCTAAACCTACGGCAAGGAGGCTCCTTCTCCGGACTCCCATAGGCTTTCTCTTTCTGGGAGTTTTTAGGATTGAGATTTCTCCTTTATGTACTTTCATCCTATCGATAGTCAGACTCCTAACCTCTGCGGTCAGTCCTTCGGACCGGATGTGCGAAGAAGAAAAAGAAGGCGCCATAAGACAGTTCCTCCATCCCCCACGGTGCGGTGCAAAGAATATTGCGAGGAGCAAAGATCTATGGCCGGGTCCAGATGACTATCCCCCACGGTGCGGTGCAAAGAATATTGCGAGGAGCAAAGATCTATGGCCGGGTCCAGATGACTATCCCCCACGGTGCGGTGCAAAGAATATTGTGAGGCCTTTGGGACTTTATCAAACTTAGCTCGAGTTTGCACTTTTTTTAGCCTTCGGGTTATTGGTGAATGGAGAAGGAAATGACTTTTCTATGGAAGACGGACGTTCTCGATTCGAGTTCTTTTAGTTCAGAATGGGACTAGCACACCCTCAGAATCGATGTCCAAATTGAATCTTGCCTTCCCCAAATGTACCCGAGAGAAAAGATAGAAAATGTCTAAAAAATCCCTCAATGAATCTGCTCAATGACAAAGGCTCAAAGAAGAGAAGATTGAGAAAGAATATTGAAAAGCTCGTAGTGGATTTTGTCCATTTTCCCGATTAGGTCATTAGACCGAATTCAATGTCTTAAGCAAATGAAAACCAAGAGCTTGAATTACTACTTATTTATTAGAAAA

mRNA sequence

ATGTGCGAAGAAGAAAAAGAAGGCGCCATAAGACAGTTCCTCCATCCCCCACGGTGCGGTGCAAAGAATATTGCGAGGAGCAAAGATCTATGGCCGGGTCCAGATGACTATCCCCCACGGTGCGGTGCAAAGAATATTGCGAGGAGCAAAGATCTATGGCCGGGTCCAGATGACTATCCCCCACGGTGCGGTGCAAAGAATATTGTGAGGCCTTTGGGACTTTATCAAACTTAG

Coding sequence (CDS)

ATGTGCGAAGAAGAAAAAGAAGGCGCCATAAGACAGTTCCTCCATCCCCCACGGTGCGGTGCAAAGAATATTGCGAGGAGCAAAGATCTATGGCCGGGTCCAGATGACTATCCCCCACGGTGCGGTGCAAAGAATATTGCGAGGAGCAAAGATCTATGGCCGGGTCCAGATGACTATCCCCCACGGTGCGGTGCAAAGAATATTGTGAGGCCTTTGGGACTTTATCAAACTTAG

Protein sequence

MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIVRPLGLYQT*
BLAST of Csa5G321500 vs. TrEMBL
Match: A0A0A0KR96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G321500 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.0e-41
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1

Query: 1  MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYP 60
          MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYP
Sbjct: 1  MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYP 60

Query: 61 PRCGAKNIVRPLGLYQT 78
          PRCGAKNIVRPLGLYQT
Sbjct: 61 PRCGAKNIVRPLGLYQT 77

BLAST of Csa5G321500 vs. NCBI nr
Match: gi|700195735|gb|KGN50912.1| (hypothetical protein Csa_5G321500 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-41
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1

Query: 1  MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYP 60
          MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYP
Sbjct: 1  MCEEEKEGAIRQFLHPPRCGAKNIARSKDLWPGPDDYPPRCGAKNIARSKDLWPGPDDYP 60

Query: 61 PRCGAKNIVRPLGLYQT 78
          PRCGAKNIVRPLGLYQT
Sbjct: 61 PRCGAKNIVRPLGLYQT 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KR96_CUCSA3.0e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G321500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700195735|gb|KGN50912.1|4.3e-41100.00hypothetical protein Csa_5G321500 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095794cucumber EST collection version 3.0transcribed_cluster
CU134923cucumber EST collection version 3.0transcribed_cluster
CU147313cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G321500.1Csa5G321500.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU147313CU147313transcribed_cluster
CU134923CU134923transcribed_cluster
CU095794CU095794transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None