Csa5G320420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G320420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 13007088 .. 13007914 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTACCCATCAGGTAAATTGGTTAAATTATTAGTGAGGCCAAAGTTGAGAGGAGTGGAGAAAAAATTGTCCCGTAAGGAACTAAAACAAAGAATGTAATTTGTGGATGAAAACGAAAAGAAGTGAAACGAAAAAAGAAGTAATATTTAATTGGGCAACAAACAACTCTGACACTCTTTTTGTCACACTGCTCCCATTCAAAAACTGAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTAAGTGACTCTCTTCTATGGCTTCCTCTTTTTGCTTTACATTCTACTATGTTTAGTCACCGTTCTGGGGGGATTCGTTTCCTCCTCCTTTTTTTTTCTTTTTCTTTTTTTAAATTTTCAGTCAAAATTTCATGACGAAAGAAACCGACCCTTTTCCACTTACCCTCCAAAAAGAGAAACAGTGAACTGAGCTTTCACATTCTCTGCCCTTTCTTGAGGATTATGATCATGTGGGTGTTTGGTATTTTTTGGTTATGGTGTTTATTTTATACCCACACAATCGGGTTCTTATATTTATTTATTCTTACTTCATTTTGGTTTTTTTTTTTTTTTATCTATTTATTTATTTTTGGACGAATTACAGGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

mRNA sequence

ATGTGTACCCATCAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

Coding sequence (CDS)

ATGTGTACCCATCAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

Protein sequence

MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPIFSLLHCGSSVVRYKREAKWEFLPCRSIA*
Homology
[Close]
BLAST of Csa5G320420 vs. TrEMBL
Match: A0A0A0KMT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G320420 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60
          MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI
Sbjct: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60

Query: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 89
          FSLLHCGSSVVRYKREAKWEFLPCRSIA
Sbjct: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88

[Close]
BLAST of Csa5G320420 vs. NCBI nr
Match: gi|700195726|gb|KGN50903.1| (hypothetical protein Csa_5G320420 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.3e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60
          MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI
Sbjct: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60

Query: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 89
          FSLLHCGSSVVRYKREAKWEFLPCRSIA
Sbjct: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88

The following BLAST results are available for this feature:
BLAST of Csa5G320420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMT8_CUCSA3.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G320420 PE=4 SV=1[more]
BLAST of Csa5G320420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195726|gb|KGN50903.1|4.3e-45100.00hypothetical protein Csa_5G320420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009058 biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity
molecular_function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU104628cucumber EST collection version 3.0transcribed_cluster
CU144465cucumber EST collection version 3.0transcribed_cluster
CU148852cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G320420.1Csa5G320420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU104628CU104628transcribed_cluster
CU148852CU148852transcribed_cluster
CU144465CU144465transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G320420Silver-seed gourdcarcuB0557
Csa5G320420Silver-seed gourdcarcuB0844
Csa5G320420Watermelon (97103) v2cuwmbB339
Csa5G320420Wax gourdcuwgoB441
Csa5G320420Cucumber (Gy14) v1cgycuB264
Csa5G320420Cucurbita maxima (Rimu)cmacuB304
Csa5G320420Cucurbita maxima (Rimu)cmacuB731
Csa5G320420Cucurbita moschata (Rifu)cmocuB292
Csa5G320420Cucurbita moschata (Rifu)cmocuB722
Csa5G320420Melon (DHL92) v3.5.1cumeB352
Csa5G320420Watermelon (Charleston Gray)cuwcgB367
Csa5G320420Watermelon (97103) v1cuwmB412
Csa5G320420Cucurbita pepo (Zucchini)cpecuB180
Csa5G320420Cucurbita pepo (Zucchini)cpecuB423
Csa5G320420Bottle gourd (USVL1VR-Ls)culsiB325
Csa5G320420Cucumber (Gy14) v2cgybcuB223
Csa5G320420Melon (DHL92) v3.6.1cumedB332