Csa5G310820 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G310820
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 12626950 .. 12627305 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTGGCGCTTCACTCGTTCGAGTTTCATCATTGAAGCTGCTCTCTTCAGTCTCTCATGGCGATGATTTCTCATCTTCATCAAAGTCCTCATCCTTCATGGGCGCGCCACTTAATTTTCTTCCTTCTTATCGTTCCAGTATGCCCGAACTTCCCTCAAACCTTGTAGCTTGCTTCTAATTCTATTTCTTATCATTCGTTTCGGTAATGGGTCCATTTTTTTCTCTTTCTTTGCAGGGAAACAAAAGCCGTTTCATGAGAATCTTGTCATTGTATCCAAGAAAATATCGGGTCTGGAGGAAGCCATGAGAATTAGGAGGTACTGCAGACTCACGGGCTTTAAGGCTCTTTAA

mRNA sequence

ATGGCAACTGGCGCTTCACTCGTTCGAGTTTCATCATTGAAGCTGCTCTCTTCAGTCTCTCATGGCGATGATTTCTCATCTTCATCAAAGTCCTCATCCTTCATGGGCGCGCCACTTAATTTTCTTCCTTCTTATCGTTCCAGGAAACAAAAGCCGTTTCATGAGAATCTTGTCATTGTATCCAAGAAAATATCGGGTCTGGAGGAAGCCATGAGAATTAGGAGGTACTGCAGACTCACGGGCTTTAAGGCTCTTTAA

Coding sequence (CDS)

ATGGCAACTGGCGCTTCACTCGTTCGAGTTTCATCATTGAAGCTGCTCTCTTCAGTCTCTCATGGCGATGATTTCTCATCTTCATCAAAGTCCTCATCCTTCATGGGCGCGCCACTTAATTTTCTTCCTTCTTATCGTTCCAGGAAACAAAAGCCGTTTCATGAGAATCTTGTCATTGTATCCAAGAAAATATCGGGTCTGGAGGAAGCCATGAGAATTAGGAGGTACTGCAGACTCACGGGCTTTAAGGCTCTTTAA

Protein sequence

MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIVSKKISGLEEAMRIRRYCRLTGFKAL*

Homology

[Close]

BLAST of Csa5G310820 vs. TrEMBL
Match: A0A0A0KMK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G310820 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRRYCRLTGFKAL 86
          SKKISGLEEAMRIRRYCRLTGFKAL
Sbjct: 61 SKKISGLEEAMRIRRYCRLTGFKAL 85

[Close]

BLAST of Csa5G310820 vs. TrEMBL
Match: A0A0A0LI62_CUCSA (Methionine aminopeptidase OS=Cucumis sativus GN=Csa_2G172500 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.8e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRR 76
          SKKISGLEEAMRIRR
Sbjct: 61 SKKISGLEEAMRIRR 75

[Close]

BLAST of Csa5G310820 vs. TrEMBL
Match: A0A068TXC2_COFCA (Methionine aminopeptidase 1 OS=Coffea canephora GN=GSCOC_T00032563001 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-06
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 10 VSSLKLLSSVSHGD----DFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIVSKKIS 69
          V SL+  ++  HG+      SSSS SSSFMGA L   PS    K   F + LV+ SK+IS
Sbjct: 12 VPSLQFSTTCFHGELSSLSSSSSSSSSSFMGARLASFPSTFPGKSSSFRKGLVVYSKRIS 71

Query: 70 GLEEAMRIRR 76
          GLEEA+RIRR
Sbjct: 72 GLEEAIRIRR 81

[Close]

BLAST of Csa5G310820 vs. TrEMBL
Match: A0A061EIL4_THECC (Methionine aminopeptidase 1B isoform 2 OS=Theobroma cacao GN=TCM_011860 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 16 LSSVSHGDDFSSSS-KSSSFMGAPLNFLPSYRSRKQKPFHENLVIVSKKISGLEEAMRIR 75
          LSS  HG   SSSS KS+ FM  PL    S  S K++ F   LV+ SKK+SGL+EAMRIR
Sbjct: 15 LSSSLHGQHVSSSSSKSTLFMAFPLTSSASTLSGKERRFEHKLVVYSKKVSGLDEAMRIR 74

[Close]

BLAST of Csa5G310820 vs. TrEMBL
Match: A0A061EBY3_THECC (Methionine aminopeptidase 1, chloroplastic OS=Theobroma cacao GN=TCM_011860 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 16 LSSVSHGDDFSSSS-KSSSFMGAPLNFLPSYRSRKQKPFHENLVIVSKKISGLEEAMRIR 75
          LSS  HG   SSSS KS+ FM  PL    S  S K++ F   LV+ SKK+SGL+EAMRIR
Sbjct: 15 LSSSLHGQHVSSSSSKSTLFMAFPLTSSASTLSGKERRFEHKLVVYSKKVSGLDEAMRIR 74

[Close]

BLAST of Csa5G310820 vs. NCBI nr
Match: gi|700195703|gb|KGN50880.1| (hypothetical protein Csa_5G310820 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRRYCRLTGFKAL 86
          SKKISGLEEAMRIRRYCRLTGFKAL
Sbjct: 61 SKKISGLEEAMRIRRYCRLTGFKAL 85

[Close]

BLAST of Csa5G310820 vs. NCBI nr
Match: gi|449458896|ref|XP_004147182.1| (PREDICTED: methionine aminopeptidase 1B, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRR 76
          SKKISGLEEAMRIRR
Sbjct: 61 SKKISGLEEAMRIRR 75

[Close]

BLAST of Csa5G310820 vs. NCBI nr
Match: gi|778668702|ref|XP_011649141.1| (PREDICTED: methionine aminopeptidase 1B, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRR 76
          SKKISGLEEAMRIRR
Sbjct: 61 SKKISGLEEAMRIRR 75

[Close]

BLAST of Csa5G310820 vs. NCBI nr
Match: gi|700206461|gb|KGN61580.1| (hypothetical protein Csa_2G172500 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRR 76
          SKKISGLEEAMRIRR
Sbjct: 61 SKKISGLEEAMRIRR 75

[Close]

BLAST of Csa5G310820 vs. NCBI nr
Match: gi|659121458|ref|XP_008460670.1| (PREDICTED: methionine aminopeptidase 1B, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-29
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFMGAPLNFLPSYRSRKQKPFHENLVIV 60
          MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSF+GAPLNFLPSYRS K+ PFHENLVIV
Sbjct: 1  MATGASLVRVSSLKLLSSVSHGDDFSSSSKSSSFLGAPLNFLPSYRSGKRTPFHENLVIV 60

Query: 61 SKKISGLEEAMRIRR 76
          SK+ISGLEEAMRIRR
Sbjct: 61 SKRISGLEEAMRIRR 75

The following BLAST results are available for this feature:

BLAST of Csa5G310820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMK3_CUCSA	2.0e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G310820 PE=4 SV=1	[more]
A0A0A0LI62_CUCSA	4.8e-32	100.00	Methionine aminopeptidase OS=Cucumis sativus GN=Csa_2G172500 PE=3 SV=1	[more]
A0A068TXC2_COFCA	2.6e-06	51.43	Methionine aminopeptidase 1 OS=Coffea canephora GN=GSCOC_T00032563001 PE=3 SV=1	[more]
A0A061EIL4_THECC	7.7e-06	55.74	Methionine aminopeptidase 1B isoform 2 OS=Theobroma cacao GN=TCM_011860 PE=4 SV=...	[more]
A0A061EBY3_THECC	7.7e-06	55.74	Methionine aminopeptidase 1, chloroplastic OS=Theobroma cacao GN=TCM_011860 PE=3...	[more]

BLAST of Csa5G310820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195703\|gb\|KGN50880.1\|	2.9e-38	100.00	hypothetical protein Csa_5G310820 [Cucumis sativus]	[more]
gi\|449458896\|ref\|XP_004147182.1\|	6.9e-32	100.00	PREDICTED: methionine aminopeptidase 1B, chloroplastic isoform X1 [Cucumis sativ...	[more]
gi\|778668702\|ref\|XP_011649141.1\|	6.9e-32	100.00	PREDICTED: methionine aminopeptidase 1B, chloroplastic isoform X2 [Cucumis sativ...	[more]
gi\|700206461\|gb\|KGN61580.1\|	6.9e-32	100.00	hypothetical protein Csa_2G172500 [Cucumis sativus]	[more]
gi\|659121458\|ref\|XP_008460670.1\|	3.2e-29	93.33	PREDICTED: methionine aminopeptidase 1B, chloroplastic isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004177	aminopeptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008235	metalloexopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G310820.1	Csa5G310820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G310820	Melon (DHL92) v3.6.1	cumedB344
Csa5G310820	Silver-seed gourd	carcuB0844
Csa5G310820	Watermelon (97103) v2	cuwmbB339
Csa5G310820	Wax gourd	cuwgoB441
Csa5G310820	Cucumber (Gy14) v1	cgycuB061
Csa5G310820	Cucurbita maxima (Rimu)	cmacuB304
Csa5G310820	Cucurbita maxima (Rimu)	cmacuB731
Csa5G310820	Cucurbita moschata (Rifu)	cmocuB292
Csa5G310820	Cucurbita moschata (Rifu)	cmocuB722
Csa5G310820	Melon (DHL92) v3.5.1	cumeB365
Csa5G310820	Watermelon (Charleston Gray)	cuwcgB367
Csa5G310820	Watermelon (97103) v1	cuwmB412
Csa5G310820	Cucurbita pepo (Zucchini)	cpecuB180
Csa5G310820	Cucurbita pepo (Zucchini)	cpecuB423
Csa5G310820	Bottle gourd (USVL1VR-Ls)	culsiB325
Csa5G310820	Cucumber (Gy14) v2	cgybcuB223