Csa5G273960 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G273960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 11583617 .. 11583950 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCACTTCTGTAGCTGCTTCTTAGTACCTTGACCTTTAAAGAATGGAACGGACATCCCTAAACAAAGAAAAAAATACAGAATGAGAGATGAACCATTAAACATAATTCCAAAAGTTTAAACGACGGTGGTACAAGGAAGCACGACGAATGGACTACGGCGCACGGTGAATGGAGCACGGCCATCAAGAAGCATCTTTTTCGAATGGATAAGGCGACAATTTCAAACAGAGTTCAAATGAAGCTCGTTTTGTTTTCAGACGACAATTTCGGACGAAGTACAGATGAAGTTCTTCCTCGACGACGATTACAAACGGAGCACGGTAAATGA

mRNA sequence

ATGGCAACCACTTCTGTAGCTGCTTCTTATTTAAACGACGGTGGTACAAGGAAGCACGACGAATGGACTACGGCGCACGGTGAATGGAGCACGGCCATCAAGAAGCATCTTTTTCGAATGGATAAGGCGACAATTTCAAACAGAGTTCAAATGAAGCTCGTTTTGTTTTCAGACGACAATTTCGGACGAAGTACAGATGAAGTTCTTCCTCGACGACGATTACAAACGGAGCACGGTAAATGA

Coding sequence (CDS)

ATGGCAACCACTTCTGTAGCTGCTTCTTATTTAAACGACGGTGGTACAAGGAAGCACGACGAATGGACTACGGCGCACGGTGAATGGAGCACGGCCATCAAGAAGCATCTTTTTCGAATGGATAAGGCGACAATTTCAAACAGAGTTCAAATGAAGCTCGTTTTGTTTTCAGACGACAATTTCGGACGAAGTACAGATGAAGTTCTTCCTCGACGACGATTACAAACGGAGCACGGTAAATGA

Protein sequence

MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDNFGRSTDEVLPRRRLQTEHGK*
Homology
[Close]
BLAST of Csa5G273960 vs. TrEMBL
Match: A0A0A0KMD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G273960 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDN 60
          MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDN
Sbjct: 1  MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDN 60

Query: 61 FGRSTDEVLPRRRLQTEHGK 81
          FGRSTDEVLPRRRLQTEHGK
Sbjct: 61 FGRSTDEVLPRRRLQTEHGK 80

[Close]
BLAST of Csa5G273960 vs. NCBI nr
Match: gi|700195648|gb|KGN50825.1| (hypothetical protein Csa_5G273960 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDN 60
          MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDN
Sbjct: 1  MATTSVAASYLNDGGTRKHDEWTTAHGEWSTAIKKHLFRMDKATISNRVQMKLVLFSDDN 60

Query: 61 FGRSTDEVLPRRRLQTEHGK 81
          FGRSTDEVLPRRRLQTEHGK
Sbjct: 61 FGRSTDEVLPRRRLQTEHGK 80

The following BLAST results are available for this feature:
BLAST of Csa5G273960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMD0_CUCSA1.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G273960 PE=4 SV=1[more]
BLAST of Csa5G273960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195648|gb|KGN50825.1|1.6e-38100.00hypothetical protein Csa_5G273960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G273960.1Csa5G273960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G273960Melon (DHL92) v3.6.1cumedB360
Csa5G273960Watermelon (97103) v2cuwmbB362
Csa5G273960Cucumber (Gy14) v1cgycuB395
Csa5G273960Melon (DHL92) v3.5.1cumeB344
Csa5G273960Watermelon (Charleston Gray)cuwcgB358
Csa5G273960Watermelon (97103) v1cuwmB433
Csa5G273960Cucurbita pepo (Zucchini)cpecuB429
Csa5G273960Bottle gourd (USVL1VR-Ls)culsiB336
Csa5G273960Bottle gourd (USVL1VR-Ls)culsiB374
Csa5G273960Cucumber (Gy14) v2cgybcuB231
Csa5G273960Cucumber (Gy14) v2cgybcuB232