Csa5G270390 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G270390
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 11322580 .. 11322902 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCTTCCCTCTTCTTCTATGTTTTCTTCTCCCTTCTTCTGTTGACCAAGAGAGCAATCAACAACTTCTTCAACTCTGTATTATTCTTAACAAATGTCATCTAAAGATCATAAACATCAACCAAACCCATGTGAGCAAAAAAAATGGAACTTTTTTCTCTTTTTTAGAACCACGTGAGCAGAAGATTGAACTTTTCTTCCTCTTTTTTCAGACCCAGGTGAGCATAAGACGGAAAACAGAAGACCCACGAACGGAGAACGGCCGGGGAACGGAAAATGGCGAACTTGCGATGGAGGAAGACGAACAAATGGCGAACTAG

mRNA sequence

ATGTTTTCTTCCCTCTTCTTCTATGTTTTCTTCTCCCTTCTTCTGTTGACCAAGAGAGCAATCAACAACTTCTTCAACTCTACCCAGGTGAGCATAAGACGGAAAACAGAAGACCCACGAACGGAGAACGGCCGGGGAACGGAAAATGGCGAACTTGCGATGGAGGAAGACGAACAAATGGCGAACTAG

Coding sequence (CDS)

ATGTTTTCTTCCCTCTTCTTCTATGTTTTCTTCTCCCTTCTTCTGTTGACCAAGAGAGCAATCAACAACTTCTTCAACTCTACCCAGGTGAGCATAAGACGGAAAACAGAAGACCCACGAACGGAGAACGGCCGGGGAACGGAAAATGGCGAACTTGCGATGGAGGAAGACGAACAAATGGCGAACTAG

Protein sequence

MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQMAN*
Homology
[Close]
BLAST of Csa5G270390 vs. TrEMBL
Match: A0A0A0KMI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G270390 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQM 60
          MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQM
Sbjct: 1  MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQM 60

Query: 61 AN 63
          AN
Sbjct: 61 AN 62

[Close]
BLAST of Csa5G270390 vs. NCBI nr
Match: gi|700195636|gb|KGN50813.1| (hypothetical protein Csa_5G270390 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQM 60
          MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQM
Sbjct: 1  MFSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELAMEEDEQM 60

Query: 61 AN 63
          AN
Sbjct: 61 AN 62

The following BLAST results are available for this feature:
BLAST of Csa5G270390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMI9_CUCSA2.2e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G270390 PE=4 SV=1[more]
BLAST of Csa5G270390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195636|gb|KGN50813.1|3.2e-26100.00hypothetical protein Csa_5G270390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU130170cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G270390.1Csa5G270390.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU130170CU130170transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G270390Watermelon (97103) v2cuwmbB362
Csa5G270390Cucumber (Gy14) v1cgycuB395
Csa5G270390Cucurbita maxima (Rimu)cmacuB762
Csa5G270390Cucurbita moschata (Rifu)cmocuB751
Csa5G270390Melon (DHL92) v3.5.1cumeB344
Csa5G270390Watermelon (Charleston Gray)cuwcgB358
Csa5G270390Watermelon (97103) v1cuwmB433
Csa5G270390Cucurbita pepo (Zucchini)cpecuB429
Csa5G270390Cucurbita pepo (Zucchini)cpecuB452
Csa5G270390Bottle gourd (USVL1VR-Ls)culsiB336
Csa5G270390Bottle gourd (USVL1VR-Ls)culsiB374
Csa5G270390Cucumber (Gy14) v2cgybcuB231
Csa5G270390Cucumber (Gy14) v2cgybcuB232
Csa5G270390Melon (DHL92) v3.6.1cumedB360
Csa5G270390Silver-seed gourdcarcuB0695