Csa5G182700 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G182700
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 8245548 .. 8245902 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGAAGCATCACCAGAACTAGCTAAGATCAAGCTAAGAGAGTGCACAAGAGAATCAATGGTACGACGACTATCAGTGAGCTCTTGGATAATTTCACTCAAAGTGCAAGATTTAGTTGATAGCTAGAATATGGAAAATTCTATTTCTCAATAAAGGAGGAATAAAGTAACCCACCATCAAAGGTACGAAGATCATCCAGAAGAGGCAGGTTATCAACACGAGAAAGTCTAATGGGAATAAGAGTGATGTTAGAGATATGACTCCCTTGAAACAATATGTAGTTGAGAAGCAATGTTGTAGAAGTAAAATTAAGAACTTCTCCAACAAATCACAAATTGCAGGATGTTGA

mRNA sequence

ATGGATGTAGAAGCATCACCAGAACTAGCTAAGATCAAGCTAAGAGAGTGCACAAGAGAATCAATGAAGAGGCAGGTTATCAACACGAGAAAGTCTAATGGGAATAAGAGTGATGTTAGAGATATGACTCCCTTGAAACAATATGTAGTTGAGAAGCAATGTTGTAGAAGTAAAATTAAGAACTTCTCCAACAAATCACAAATTGCAGGATGTTGA

Coding sequence (CDS)

ATGGATGTAGAAGCATCACCAGAACTAGCTAAGATCAAGCTAAGAGAGTGCACAAGAGAATCAATGAAGAGGCAGGTTATCAACACGAGAAAGTCTAATGGGAATAAGAGTGATGTTAGAGATATGACTCCCTTGAAACAATATGTAGTTGAGAAGCAATGTTGTAGAAGTAAAATTAAGAACTTCTCCAACAAATCACAAATTGCAGGATGTTGA

Protein sequence

MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIKNFSNKSQIAGC*
Homology
[Close]
BLAST of Csa5G182700 vs. TrEMBL
Match: A0A0A0KLP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182700 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60
          MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK
Sbjct: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60

Query: 61 NFSNKSQIAGC 72
          NFSNKSQIAGC
Sbjct: 61 NFSNKSQIAGC 71

[Close]
BLAST of Csa5G182700 vs. NCBI nr
Match: gi|700195388|gb|KGN50565.1| (hypothetical protein Csa_5G182700 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60
          MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK
Sbjct: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60

Query: 61 NFSNKSQIAGC 72
          NFSNKSQIAGC
Sbjct: 61 NFSNKSQIAGC 71

The following BLAST results are available for this feature:
BLAST of Csa5G182700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLP7_CUCSA2.4e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182700 PE=4 SV=1[more]
BLAST of Csa5G182700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195388|gb|KGN50565.1|3.4e-32100.00hypothetical protein Csa_5G182700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G182700.1Csa5G182700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G182700Bottle gourd (USVL1VR-Ls)culsiB334
Csa5G182700Bottle gourd (USVL1VR-Ls)culsiB341
Csa5G182700Bottle gourd (USVL1VR-Ls)culsiB360
Csa5G182700Bottle gourd (USVL1VR-Ls)culsiB363
Csa5G182700Cucumber (Gy14) v2cgybcuB036
Csa5G182700Cucumber (Gy14) v2cgybcuB136
Csa5G182700Cucumber (Gy14) v2cgybcuB178
Csa5G182700Cucumber (Gy14) v2cgybcuB224
Csa5G182700Cucumber (Gy14) v2cgybcuB279
Csa5G182700Melon (DHL92) v3.6.1cumedB348
Csa5G182700Melon (DHL92) v3.6.1cumedB374
Csa5G182700Melon (DHL92) v3.6.1cumedB398
Csa5G182700Silver-seed gourdcarcuB0098
Csa5G182700Silver-seed gourdcarcuB0366
Csa5G182700Silver-seed gourdcarcuB0694
Csa5G182700Silver-seed gourdcarcuB1014
Csa5G182700Watermelon (97103) v2cuwmbB355
Csa5G182700Watermelon (97103) v2cuwmbB369
Csa5G182700Watermelon (97103) v2cuwmbB372
Csa5G182700Watermelon (97103) v2cuwmbB376
Csa5G182700Watermelon (97103) v2cuwmbB392
Csa5G182700Wax gourdcuwgoB493
Csa5G182700Wax gourdcuwgoB433
Csa5G182700Wax gourdcuwgoB463
Csa5G182700Wax gourdcuwgoB500
Csa5G182700Cucumber (Chinese Long) v2cucuB101
Csa5G182700Cucumber (Chinese Long) v2cucuB138
Csa5G182700Cucumber (Chinese Long) v2cucuB167
Csa5G182700Cucumber (Gy14) v1cgycuB056
Csa5G182700Cucumber (Gy14) v1cgycuB152
Csa5G182700Cucumber (Gy14) v1cgycuB201
Csa5G182700Cucumber (Gy14) v1cgycuB251
Csa5G182700Cucumber (Gy14) v1cgycuB271
Csa5G182700Cucurbita maxima (Rimu)cmacuB552
Csa5G182700Cucurbita maxima (Rimu)cmacuB677
Csa5G182700Cucurbita maxima (Rimu)cmacuB746
Csa5G182700Cucurbita maxima (Rimu)cmacuB747
Csa5G182700Cucurbita moschata (Rifu)cmocuB542
Csa5G182700Cucurbita moschata (Rifu)cmocuB666
Csa5G182700Cucurbita moschata (Rifu)cmocuB736
Csa5G182700Cucurbita moschata (Rifu)cmocuB737
Csa5G182700Melon (DHL92) v3.5.1cumeB339
Csa5G182700Melon (DHL92) v3.5.1cumeB390
Csa5G182700Melon (DHL92) v3.5.1cumeB411
Csa5G182700Watermelon (Charleston Gray)cuwcgB349
Csa5G182700Watermelon (Charleston Gray)cuwcgB381
Csa5G182700Watermelon (Charleston Gray)cuwcgB384
Csa5G182700Watermelon (Charleston Gray)cuwcgB387
Csa5G182700Watermelon (Charleston Gray)cuwcgB402
Csa5G182700Watermelon (97103) v1cuwmB373
Csa5G182700Watermelon (97103) v1cuwmB386
Csa5G182700Watermelon (97103) v1cuwmB391
Csa5G182700Watermelon (97103) v1cuwmB423
Csa5G182700Watermelon (97103) v1cuwmB429
Csa5G182700Cucurbita pepo (Zucchini)cpecuB084
Csa5G182700Cucurbita pepo (Zucchini)cpecuB280
Csa5G182700Cucurbita pepo (Zucchini)cpecuB437
Csa5G182700Cucurbita pepo (Zucchini)cpecuB438
Csa5G182700Cucurbita pepo (Zucchini)cpecuB734