Csa5G180910 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G180910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 7932472 .. 7934163 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTGTGATGATGATTGAACATTCAAGTTTTCCGTATCATGTAATGTTAGCATTTGACGAAAGACGAGAATTTCTAGTCCGCCTAAGTCGTCAATTACCAGTAAACCACTTTTCTCTTTTTCCCCGCATTTTCCTCTCATAATTATAGCTCTTTTGTTCTTAATCCCCATCGAGTTGTTAATTTTTGCTTCAAATTTCTCTCACCCTTGGAATTTTTTGGCCGATTTTAGGTATTAAACCTAATCATATGTCACAATTTGATTATCGTCCTAAAATACCATCAAATTTCCAATTACCATTTGAAGTTAGCATGAACCAGGAACTGGGTTTTCTTTGTTTGAATATCACAAGTGCTTTTTTTTTTTCACCCATCCCTTTTCTCGTTTATCTCATGTTTTGCCTTTGTTAAATCCCTAGTTTTGGTTAATGAATCTCTTCTTTCTTGGTGGGGTATCAAGAAATCCGCCTCAAAGTTTTGTTTTATTCATATTAAGCAAAATTCTTCTGATGGAACTAGTTGGTGAAGGAAGAGACAGGTTTCTGTTGTCATCAATCTGAACAGAGACTAGTTAAAAGTATGAGGAATGTTGTGAGAAAATACATAGTCACGCGTTGTATGATGATCAAATATTGGTGATAAGAACATTTGACCACTCTTCTTTATATTGAACTTTATTTAAACAGGGTGGAAGAAAGAATGCATTATTTTGTATAAAAGCCGTGTCATGAGAGTGTGGGTCGCGTGTGTAAAGGTAAAAAAAAAAGCTAGTTGTTGGGTAGATGATATTTATGGAACTTTTCTTGTTTGACTTTGCAGTTCAAGGAAAGATGGCGTTCTTGTATTATATGGCTGAATAAGGGAGTCCGTACGGTATTGTTCGTTCATCACAGACGAGGAAAGTAGGCAGTTAGAATTAGTTTTGTTTCGTGGAAGATACGGAGCTTCACATAATTTTCAAGGTTTAAACCAATTTTATAAATGTTTATGGTATTGCCTTGTGATATGGAACTTAGAAACTCTATGTTTGGCCCCTAAGACTAAGGACTTTCGTTTGTTTAATAGTAAAGTTAGACTGGACCTCTTGTATTTATTCCTGAAAGGTTTGTTTATGAAAGCTACTTTTGGCCTTTGGGGCATTCAAAGTGACATAAACCAAAATAACAATCTGGTATGGTTAGATATATGATCTAGGCCATAACATATAATTCCATTTTTTCAATTTTGTTTATCATGTATGTACCATTTTGTCAATTTCTAGACTTTCGAATCATTAAAGACAAAATTGAAAAATGGTGTCGAGGGACTTAATCATTTGCTAAGCCTTATGTTAATTATATACCTTTGCAAGACCAAGTAACTCATTTTTTTTTTCAACTGATTCATAATTTGTGGTCATACAAGTACTGGCGAGTAGTGTCATGGCTATGGTCATAAAATCTCTCTTTTTTAATGGGAACTTAACAACAAATTTACAACTACCATTGTTTATAGTCTTATTTTTGTACCTTTTGTAGAAAATTCCAGAAAGGTGGCTTAATTGTTTACTGCCATTGACTTTTGGTTTATATTTGTGTGAACTGGTAGTTTAAAAAGTAGCCTTCTTTGTTTGGTTGTTACTGTTTTCCAGGTGTGCTGCTAAACAACCCACCCATATTAAAAGTCCAGAATTGAGGGCAAAACCGTCCCGTTAA

mRNA sequence

ATGATGATTGAACATTCAAGTTTTCCGTATCATGTAATGTTAGCATTTGACGAAAGACGAGAATTTCTAGTCCGCCTAAGTCGTCAATTACCATTCAAGGAAAGATGGCGTTCTTGTATTATATGGCTGAATAAGGGAGTCCGTACGGTATTGTTCGTTCATCACAGACGAGGAAAGTGTGCTGCTAAACAACCCACCCATATTAAAAGTCCAGAATTGAGGGCAAAACCGTCCCGTTAA

Coding sequence (CDS)

ATGATGATTGAACATTCAAGTTTTCCGTATCATGTAATGTTAGCATTTGACGAAAGACGAGAATTTCTAGTCCGCCTAAGTCGTCAATTACCATTCAAGGAAAGATGGCGTTCTTGTATTATATGGCTGAATAAGGGAGTCCGTACGGTATTGTTCGTTCATCACAGACGAGGAAAGTGTGCTGCTAAACAACCCACCCATATTAAAAGTCCAGAATTGAGGGCAAAACCGTCCCGTTAA

Protein sequence

MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKCAAKQPTHIKSPELRAKPSR*
Homology
[Close]
BLAST of Csa5G180910 vs. TrEMBL
Match: A0A0A0KQ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180910 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKC 60
          MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKC
Sbjct: 1  MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKC 60

Query: 61 AAKQPTHIKSPELRAKPSR 80
          AAKQPTHIKSPELRAKPSR
Sbjct: 61 AAKQPTHIKSPELRAKPSR 79

[Close]
BLAST of Csa5G180910 vs. NCBI nr
Match: gi|700195355|gb|KGN50532.1| (hypothetical protein Csa_5G180910 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.4e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKC 60
          MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKC
Sbjct: 1  MMIEHSSFPYHVMLAFDERREFLVRLSRQLPFKERWRSCIIWLNKGVRTVLFVHHRRGKC 60

Query: 61 AAKQPTHIKSPELRAKPSR 80
          AAKQPTHIKSPELRAKPSR
Sbjct: 61 AAKQPTHIKSPELRAKPSR 79

The following BLAST results are available for this feature:
BLAST of Csa5G180910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ82_CUCSA3.8e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180910 PE=4 SV=1[more]
BLAST of Csa5G180910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195355|gb|KGN50532.1|5.4e-39100.00hypothetical protein Csa_5G180910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G180910.1Csa5G180910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G180910CSPI05G09510Wild cucumber (PI 183967)cpicuB240
Csa5G180910CsGy5G006830Cucumber (Gy14) v2cgybcuB224
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G180910Melon (DHL92) v3.5.1cumeB339
Csa5G180910Melon (DHL92) v3.5.1cumeB354
Csa5G180910Melon (DHL92) v3.5.1cumeB411
Csa5G180910Watermelon (Charleston Gray)cuwcgB342
Csa5G180910Watermelon (Charleston Gray)cuwcgB381
Csa5G180910Watermelon (Charleston Gray)cuwcgB388
Csa5G180910Watermelon (Charleston Gray)cuwcgB402
Csa5G180910Watermelon (97103) v1cuwmB367
Csa5G180910Watermelon (97103) v1cuwmB391
Csa5G180910Watermelon (97103) v1cuwmB423
Csa5G180910Watermelon (97103) v1cuwmB429
Csa5G180910Cucurbita pepo (Zucchini)cpecuB084
Csa5G180910Cucurbita pepo (Zucchini)cpecuB185
Csa5G180910Cucurbita pepo (Zucchini)cpecuB437
Csa5G180910Cucurbita pepo (Zucchini)cpecuB438
Csa5G180910Cucurbita pepo (Zucchini)cpecuB734
Csa5G180910Bottle gourd (USVL1VR-Ls)culsiB334
Csa5G180910Bottle gourd (USVL1VR-Ls)culsiB341
Csa5G180910Bottle gourd (USVL1VR-Ls)culsiB352
Csa5G180910Bottle gourd (USVL1VR-Ls)culsiB363
Csa5G180910Cucumber (Gy14) v2cgybcuB178
Csa5G180910Cucumber (Gy14) v2cgybcuB230
Csa5G180910Melon (DHL92) v3.6.1cumedB347
Csa5G180910Melon (DHL92) v3.6.1cumedB348
Csa5G180910Melon (DHL92) v3.6.1cumedB398
Csa5G180910Silver-seed gourdcarcuB0296
Csa5G180910Silver-seed gourdcarcuB0694
Csa5G180910Silver-seed gourdcarcuB0880
Csa5G180910Watermelon (97103) v2cuwmbB375
Csa5G180910Watermelon (97103) v2cuwmbB392
Csa5G180910Watermelon (97103) v2cuwmbB411
Csa5G180910Wax gourdcuwgoB493
Csa5G180910Wax gourdcuwgoB494
Csa5G180910Wax gourdcuwgoB469
Csa5G180910Wax gourdcuwgoB514
Csa5G180910Cucumber (Chinese Long) v2cucuB138
Csa5G180910Cucumber (Chinese Long) v2cucuB157
Csa5G180910Cucumber (Chinese Long) v2cucuB161
Csa5G180910Cucumber (Gy14) v1cgycuB056
Csa5G180910Cucumber (Gy14) v1cgycuB251
Csa5G180910Cucumber (Gy14) v1cgycuB532
Csa5G180910Cucurbita maxima (Rimu)cmacuB306
Csa5G180910Cucurbita maxima (Rimu)cmacuB616
Csa5G180910Cucurbita maxima (Rimu)cmacuB677
Csa5G180910Cucurbita maxima (Rimu)cmacuB746
Csa5G180910Cucurbita maxima (Rimu)cmacuB747
Csa5G180910Cucurbita moschata (Rifu)cmocuB295
Csa5G180910Cucurbita moschata (Rifu)cmocuB607
Csa5G180910Cucurbita moschata (Rifu)cmocuB666
Csa5G180910Cucurbita moschata (Rifu)cmocuB736
Csa5G180910Cucurbita moschata (Rifu)cmocuB737