Csa5G180880 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G180880
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Chr5 : 7918663 .. 7919017 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAAAATGTGGAGTGATTCATATGACAAGTCACAACATAGAATGCGAAGGTAGATGGTGTGGAACACCTGTACTTGAAAAGGCTCCTCCATCTCTTTGATAAAATTAAAAAGAAGGAACAGCAGAGTCAAATTATATTACATTTTTATCTGTCACTCACGAGGATGAAAAAAAGACTATGGATTGGAGGCTTCAATGGATCACTACAGTGCTATGGTCGAGCTAGGAGGATCAAAGAAGTCTGGGATTTTATTGAAAACATGCCTATTGGTTTAGGGATTACTGTATATGGTGCTACGTTGGGTGCTTGTAACATTCACAAAAATGTTGAATCGGGGGAGAGCCGCTAA

mRNA sequence

ATGTATGCAAAATGTGGAGTGATTCATATGACAAGTCACAACATAGAATGCGAAGGTAGATGGTGTGGAACACCTTGCTATGGTCGAGCTAGGAGGATCAAAGAAGTCTGGGATTTTATTGAAAACATGCCTATTGGTTTAGGGATTACTGTATATGGTGCTACGTTGGGTGCTTGTAACATTCACAAAAATGTTGAATCGGGGGAGAGCCGCTAA

Coding sequence (CDS)

ATGTATGCAAAATGTGGAGTGATTCATATGACAAGTCACAACATAGAATGCGAAGGTAGATGGTGTGGAACACCTTGCTATGGTCGAGCTAGGAGGATCAAAGAAGTCTGGGATTTTATTGAAAACATGCCTATTGGTTTAGGGATTACTGTATATGGTGCTACGTTGGGTGCTTGTAACATTCACAAAAATGTTGAATCGGGGGAGAGCCGCTAA

Protein sequence

MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGESR*

Homology

[Close]

BLAST of Csa5G180880 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.9e-08
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA R+ E WDFI  MP+   + VYGA LGAC IHKNV   E
Sbjct: 586 GRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627

[Close]

BLAST of Csa5G180880 vs. Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.2e-06
Identity = 24/48 (50.00%), Postives = 28/48 (58.33%), Query Frame = 1


Query: 22  CGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           C     GRA R+ E  +FIE+MP+     V+GA LGAC IHKNV+  E
Sbjct: 399 CLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAE 446

[Close]

BLAST of Csa5G180880 vs. TrEMBL
Match: A0A0A0KNU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180880 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACN 60
          MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACN
Sbjct: 1  MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACN 60

Query: 61 IHKNVESGESR 72
          IHKNVESGESR
Sbjct: 61 IHKNVESGESR 71

[Close]

BLAST of Csa5G180880 vs. TrEMBL
Match: A0A0A0KPP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-11
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA RIKE WDFIENMPI  GITVYGA LGAC IHKN+E GE
Sbjct: 598 GRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 639

[Close]

BLAST of Csa5G180880 vs. TrEMBL
Match: A0A059BIH8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03194 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA R+K+ WDFI+ MPI  GITV+GA LGAC IHKNVE GE
Sbjct: 537 GRAGRLKQAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGE 578

[Close]

BLAST of Csa5G180880 vs. TrEMBL
Match: A0A067DM20_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003531mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA R+ E WDFI+ MPI  GITV+GA LGAC IHKNVE GE
Sbjct: 589 GRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGE 630

[Close]

BLAST of Csa5G180880 vs. TrEMBL
Match: V4T7P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000307mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA R+ E WDFI+ MPI  GITV+GA LGAC IHKNVE GE
Sbjct: 589 GRAGRLNEAWDFIQKMPIEPGITVFGAMLGACKIHKNVELGE 630

[Close]

BLAST of Csa5G180880 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-09
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA R+ E WDFI  MP+   + VYGA LGAC IHKNV   E
Sbjct: 586 GRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627

[Close]

BLAST of Csa5G180880 vs. TAIR10
Match: AT3G11460.1 (AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.2e-07
Identity = 24/48 (50.00%), Postives = 28/48 (58.33%), Query Frame = 1


Query: 22  CGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           C     GRA R+ E  +FIE+MP+     V+GA LGAC IHKNV+  E
Sbjct: 399 CLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAE 446

[Close]

BLAST of Csa5G180880 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.4e-06
Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = 1


Query: 22  CGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           C    +GRA  ++E  +FIE MPI   +  +G+ L AC +HKN++ G+
Sbjct: 556 CMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGK 603

[Close]

BLAST of Csa5G180880 vs. TAIR10
Match: AT4G21300.1 (AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 9.8e-06
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 1


Query: 22  CGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           C    +GRA R+ E ++ +++MP      V+G  LGAC +HKNVE  E
Sbjct: 685 CVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAE 732

[Close]

BLAST of Csa5G180880 vs. NCBI nr
Match: gi|700195352|gb|KGN50529.1| (hypothetical protein Csa_5G180880 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACN 60
          MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACN
Sbjct: 1  MYAKCGVIHMTSHNIECEGRWCGTPCYGRARRIKEVWDFIENMPIGLGITVYGATLGACN 60

Query: 61 IHKNVESGESR 72
          IHKNVESGESR
Sbjct: 61 IHKNVESGESR 71

[Close]

BLAST of Csa5G180880 vs. NCBI nr
Match: gi|659090279|ref|XP_008445930.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 7.3e-11
Identity = 35/42 (83.33%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA RIKE WDFIENMPI  GITVYGA LGAC IHKNVE GE
Sbjct: 598 GRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNVEFGE 639

[Close]

BLAST of Csa5G180880 vs. NCBI nr
Match: gi|778704342|ref|XP_004147126.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 9.6e-11
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA RIKE WDFIENMPI  GITVYGA LGAC IHKN+E GE
Sbjct: 598 GRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 639

[Close]

BLAST of Csa5G180880 vs. NCBI nr
Match: gi|778704346|ref|XP_011655522.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 9.6e-11
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA RIKE WDFIENMPI  GITVYGA LGAC IHKN+E GE
Sbjct: 414 GRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 455

[Close]

BLAST of Csa5G180880 vs. NCBI nr
Match: gi|659090281|ref|XP_008445931.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 34/42 (80.95%), Postives = 34/42 (80.95%), Query Frame = 1


Query: 28  GRARRIKEVWDFIENMPIGLGITVYGATLGACNIHKNVESGE 70
           GRA RIKE WDFIENMPI  GITVYGA LGAC IHKN E GE
Sbjct: 598 GRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNDELGE 639

The following BLAST results are available for this feature:

BLAST of Csa5G180880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR32_ARATH	9.9e-08	59.52	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
PP223_ARATH	9.2e-06	50.00	Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis th...	[more]

BLAST of Csa5G180880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNU8_CUCSA	2.1e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180880 PE=4 SV=1	[more]
A0A0A0KPP6_CUCSA	6.7e-11	80.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1	[more]
A0A059BIH8_EUCGR	1.1e-08	71.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03194 PE=4 SV=1	[more]
A0A067DM20_CITSI	1.8e-08	71.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003531mg PE=4 SV=1	[more]
V4T7P0_9ROSI	1.8e-08	71.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000307mg PE=4 SV=1	[more]

BLAST of Csa5G180880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11290.1	5.6e-09	59.52	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G11460.1	5.2e-07	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22070.1	4.4e-06	39.58	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G21300.1	9.8e-06	41.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Csa5G180880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195352\|gb\|KGN50529.1\|	2.9e-36	100.00	hypothetical protein Csa_5G180880 [Cucumis sativus]	[more]
gi\|659090279\|ref\|XP_008445930.1\|	7.3e-11	83.33	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc...	[more]
gi\|778704342\|ref\|XP_004147126.2\|	9.6e-11	80.95	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc...	[more]
gi\|778704346\|ref\|XP_011655522.1\|	9.6e-11	80.95	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc...	[more]
gi\|659090281\|ref\|XP_008445931.1\|	4.7e-10	80.95	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G180880.1	Csa5G180880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 27..69 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G180880	Melon (DHL92) v3.6.1	cumedB347
Csa5G180880	Melon (DHL92) v3.6.1	cumedB348
Csa5G180880	Melon (DHL92) v3.6.1	cumedB398
Csa5G180880	Silver-seed gourd	carcuB0296
Csa5G180880	Silver-seed gourd	carcuB0694
Csa5G180880	Silver-seed gourd	carcuB0880
Csa5G180880	Watermelon (97103) v2	cuwmbB375
Csa5G180880	Watermelon (97103) v2	cuwmbB392
Csa5G180880	Watermelon (97103) v2	cuwmbB411
Csa5G180880	Wax gourd	cuwgoB493
Csa5G180880	Wax gourd	cuwgoB494
Csa5G180880	Wax gourd	cuwgoB469
Csa5G180880	Wax gourd	cuwgoB514
Csa5G180880	Cucumber (Chinese Long) v2	cucuB138
Csa5G180880	Cucumber (Chinese Long) v2	cucuB157
Csa5G180880	Cucumber (Chinese Long) v2	cucuB161
Csa5G180880	Cucumber (Gy14) v1	cgycuB056
Csa5G180880	Cucumber (Gy14) v1	cgycuB251
Csa5G180880	Cucumber (Gy14) v1	cgycuB532
Csa5G180880	Cucurbita maxima (Rimu)	cmacuB306
Csa5G180880	Cucurbita maxima (Rimu)	cmacuB616
Csa5G180880	Cucurbita maxima (Rimu)	cmacuB677
Csa5G180880	Cucurbita maxima (Rimu)	cmacuB746
Csa5G180880	Cucurbita maxima (Rimu)	cmacuB747
Csa5G180880	Cucurbita moschata (Rifu)	cmocuB295
Csa5G180880	Cucurbita moschata (Rifu)	cmocuB607
Csa5G180880	Cucurbita moschata (Rifu)	cmocuB666
Csa5G180880	Cucurbita moschata (Rifu)	cmocuB736
Csa5G180880	Cucurbita moschata (Rifu)	cmocuB737
Csa5G180880	Melon (DHL92) v3.5.1	cumeB339
Csa5G180880	Melon (DHL92) v3.5.1	cumeB354
Csa5G180880	Melon (DHL92) v3.5.1	cumeB411
Csa5G180880	Watermelon (Charleston Gray)	cuwcgB342
Csa5G180880	Watermelon (Charleston Gray)	cuwcgB381
Csa5G180880	Watermelon (Charleston Gray)	cuwcgB388
Csa5G180880	Watermelon (Charleston Gray)	cuwcgB402
Csa5G180880	Watermelon (97103) v1	cuwmB367
Csa5G180880	Watermelon (97103) v1	cuwmB391
Csa5G180880	Watermelon (97103) v1	cuwmB423
Csa5G180880	Watermelon (97103) v1	cuwmB429
Csa5G180880	Cucurbita pepo (Zucchini)	cpecuB084
Csa5G180880	Cucurbita pepo (Zucchini)	cpecuB185
Csa5G180880	Cucurbita pepo (Zucchini)	cpecuB437
Csa5G180880	Cucurbita pepo (Zucchini)	cpecuB438
Csa5G180880	Cucurbita pepo (Zucchini)	cpecuB734
Csa5G180880	Bottle gourd (USVL1VR-Ls)	culsiB334
Csa5G180880	Bottle gourd (USVL1VR-Ls)	culsiB341
Csa5G180880	Bottle gourd (USVL1VR-Ls)	culsiB352
Csa5G180880	Bottle gourd (USVL1VR-Ls)	culsiB363
Csa5G180880	Cucumber (Gy14) v2	cgybcuB178
Csa5G180880	Cucumber (Gy14) v2	cgybcuB224
Csa5G180880	Cucumber (Gy14) v2	cgybcuB230