Csa5G175750 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G175750
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 7346082 .. 7346407 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTATTGCTGAAGTTCAGTCACCGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGGTCCTCTTTTATTAGCTCTCTAATTTTGCTGAATTGAAACTTATGCATTCATTTGAAGTCCATATTATCCAGTTTGGTTTGTAGAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGA

mRNA sequence

ATGGAATCTATTGCTGAAGTTCAGTCACCGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGA

Coding sequence (CDS)

ATGGAATCTATTGCTGAAGTTCAGTCACCGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGA

Protein sequence

MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDMCNSSWKMLCRCLLFINVFP*
Homology
[Close]
BLAST of Csa5G175750 vs. TrEMBL
Match: A0A0A0KRX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175750 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60
          MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM
Sbjct: 1  MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60

Query: 61 CNSSWKMLCRCLLFINVFP 80
          CNSSWKMLCRCLLFINVFP
Sbjct: 61 CNSSWKMLCRCLLFINVFP 79

[Close]
BLAST of Csa5G175750 vs. NCBI nr
Match: gi|700195274|gb|KGN50451.1| (hypothetical protein Csa_5G175750 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60
          MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM
Sbjct: 1  MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60

Query: 61 CNSSWKMLCRCLLFINVFP 80
          CNSSWKMLCRCLLFINVFP
Sbjct: 61 CNSSWKMLCRCLLFINVFP 79

The following BLAST results are available for this feature:
BLAST of Csa5G175750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRX4_CUCSA1.7e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175750 PE=4 SV=1[more]
BLAST of Csa5G175750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195274|gb|KGN50451.1|2.4e-39100.00hypothetical protein Csa_5G175750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109153cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G175750.1Csa5G175750.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU109153CU109153transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G175750Melon (DHL92) v3.5.1cumeB370
Csa5G175750Watermelon (Charleston Gray)cuwcgB380
Csa5G175750Watermelon (97103) v1cuwmB428
Csa5G175750Cucurbita pepo (Zucchini)cpecuB437
Csa5G175750Cucurbita pepo (Zucchini)cpecuB438
Csa5G175750Bottle gourd (USVL1VR-Ls)culsiB363
Csa5G175750Cucumber (Gy14) v2cgybcuB224
Csa5G175750Melon (DHL92) v3.6.1cumedB348
Csa5G175750Silver-seed gourdcarcuB0858
Csa5G175750Silver-seed gourdcarcuB0867
Csa5G175750Watermelon (97103) v2cuwmbB368
Csa5G175750Wax gourdcuwgoB504
Csa5G175750Cucumber (Gy14) v1cgycuB251
Csa5G175750Cucurbita maxima (Rimu)cmacuB746
Csa5G175750Cucurbita maxima (Rimu)cmacuB747
Csa5G175750Cucurbita moschata (Rifu)cmocuB736
Csa5G175750Cucurbita moschata (Rifu)cmocuB737