Csa5G174660 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G174660
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 7281883 .. 7284505 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCCGCGGCAATCGAGGCAAAAATCTCTTTCCAAGAGTTGCCATGGTCTACACCTATCACCAAAGTTTTTAAGTGTTAAATACAGGTAGATTACTTGCAATTCAAAATCTTTCCTCTGAAAAATGAAATGACTTGATTGTGCCTTCTCCTTGAGCAACAAATGATATTCAACAAGACTAAATGTAGCTGTTTATACATCTACCTTCTTCAACTAATTCAAACACTATATTTCTATTATTTCAGATAAGAGACAATCCAGCCTGGACACAAGCATCGAACATCAGATATTGGTTTGGCTTGCGTAGAAGGTGAGTCGGTTTCCTAATGGATTATATTTTAGGAATGACATCAAGTCACTAACCAGACTTCCACTAATGGCTGAACTCTTTTGTGAAGGATGCAACGTCTCTTGTTGATGCTGATAGACAAATGGAGACGTGAATGAAACATCATGGTAAGTCCTTTGATATTCATTCCTGTTCACTTTTCTTTTTGTGCAGTGAAATAACATCTTTTCATTATAACACAAATGTTAAGATGTGTTTGGAATACTTTTTAAGTGGTTAGAAGAGTATTTTTAAGCACTTGAAAAGTCATTCCAAACAAACCTTTTTCATTTCATTTGTAGAGTTGAAGTTAAGTGAGCTTTTTTTTTCTTGCATCAGCATTTTTTAGTGGATCATATGAATTCATACACTGTCATCTGTCCAGCCAAATTCTTTGAGTTAGATAATTAACACAAGTCAACAAAAATCCAAAACAAATTAGGTTTTTGGGTTGGTCCTTTTGGACTTAAATCCATCAGATTAAAATTGTTTTGGACCGTTGGATTGGGCCTGATATGGATCAAAACAACCGGCCCACGAGTTGACCCGAACTCCAAAATGTTGGTTTGTATCCAATCCTAAACGTTCTATTTTTTTTATTCTTTTAAAAACTAAATTTATAAATCATTTCATGTTTTCTATTATTAATTGAAAAAATAAGTAAAAATATGCTTTAATCATTCTTTTGCTTTCTTAAGTTCTAATGCCCAAAACAGATTGAAACTTTATCTTTAAATATAAATTGTTTTTGTTTGGACTTTGGTACAAATATATAATTGATTTGTTTTATATTAATCAGCTTATATCATCAATAATCATAACATTGCCTTTACTCTTATTTAGCTTATTTAATTTTTTAACCATTAATCATTTCTAAAGCCCTACCCAAATGGCTAATAGACAGTTAAACACCTTTCTAGTACTATCGTAGTACTAAAGCATTTTTTACTAAATTTCACGAACTAAAATTTTACTCATAATAATGAATCAATATGACTTTAACTATTATGCATTAGAATATTACTGTCATTTTTTTTTCTTATGGCAGCTTTAATCTCAGTAAGGCCTCTTTTCTCTTTGCAGCAATCTCATTTGGACATAATAGTATAGAAAGAAAAATAGCATTTTAAAAGGACAAAAAAGGCATAAACAGATTCCCATAAAAACTAAAAAGTGGTCGTGGATATCAATTGTATTGTCAAACTCAGGTAGGGTACCCATTTATTGTATCTTATATCTATTTAAAATCCAAGGGTTTAAAACTTTTCAAAAATTCATTATCATTTCAAAGATTTTCATAAAAAGGAAAAAAAAAATCTCTATTTAAAATGAACTTTGTAGGAATCCTGTTTCTATTTCTTTCGAATTATTATAAAATATTAAATGTCGTAGGTGAAAAAATGAATACTTCTTTGATTAAGTATGAAAACGGACCTAAAGAGTCGACCATTAAGCCGTATAATGCCCAAGTATGGAGGTCGACCTAAGTATTGTCCTTTTGTTGCACAATGCTTGAGTCACTAGTAAAATATAGATCACGTGTGATTGATTATAATGATTAGTAACAGCTTGATTAATAATTCGAGAAATTAATTAGTAAGTAATCGTAACAAAAGTCTATTTCTATATAATCGAGAGGTCTCATGTGACACTTAAATACATCCGAATGCATATACTCTGTAGTTTTCTCTTAACAATTACTGATTTTGATTGTAAGTGTTGTGGTAGCCAAACACCACACTAGTGTTAGTTTCTCTATTTTACGGGGCATTTGTTTTATTCTTTCCAGAGAGTTACAACTTCATTATTGATACCAAATATCAATGTCAATGTTAAATAATGGTCATTGAAGTTGGCTGTCTAAGTTGGTCATTGCTAAAGCTTCGTGTTTGTAATAGCGTAAAGATTGTGTTATATCTAATCTTGTTTAATTTGGTATCGCACTATGACTTTACATTCAATTTGGTTATTTTATAGGTTTTGGAAGTTAAAGAGGTAGAATTGAGCATTAAGGAGAAAATTGGGCGATAACGAACCAATTCGAAGTCCTAACAAAGAAATTAGGCCAAAAGGCTAAAAAACTACAAAACTGCAACTAAAAGGGATGCAAAATTTGTGTTTTTGTGATGGCATTGCGACGCTGTCTTGCACCGTTGGGTGGATATAAATTTGTATATTTGTTTTTAGGTCCTATTTTTTATCTAGGTGGGTATTTTGGGCACATGACCACTCATTTTATTCGTTTTTTGTCCTCAATCAATCTACAACATTAGGTTTACTTTTATCTATTC

mRNA sequence

ATGAAGCTCCGCGGCAATCGAGGCAAAAATCTCTTTCCAAGAGTTGCCATGATAAGAGACAATCCAGCCTGGACACAAGCATCGAACATCAGATATTGGTTTGGCTTGCGTAGAAGGATGCAACGTCTCTTGTTGATGCTGATAGACAAATGGAGACGTGAATGA

Coding sequence (CDS)

ATGAAGCTCCGCGGCAATCGAGGCAAAAATCTCTTTCCAAGAGTTGCCATGATAAGAGACAATCCAGCCTGGACACAAGCATCGAACATCAGATATTGGTTTGGCTTGCGTAGAAGGATGCAACGTCTCTTGTTGATGCTGATAGACAAATGGAGACGTGAATGA

Protein sequence

MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE*

Homology

[Close]

BLAST of Csa5G174660 vs. TrEMBL
Match: A0A0A0KL92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174660 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1  MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE 55
          MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE
Sbjct: 1  MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE 54

[Close]

BLAST of Csa5G174660 vs. NCBI nr
Match: gi|700195263|gb|KGN50440.1| (hypothetical protein Csa_5G174660 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1  MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE 55
          MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE
Sbjct: 1  MKLRGNRGKNLFPRVAMIRDNPAWTQASNIRYWFGLRRRMQRLLLMLIDKWRRE 54

The following BLAST results are available for this feature:

BLAST of Csa5G174660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL92_CUCSA	1.2e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174660 PE=4 SV=1	[more]

BLAST of Csa5G174660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195263\|gb\|KGN50440.1\|	1.7e-23	100.00	hypothetical protein Csa_5G174660 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0022857	transmembrane transporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105615	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G174660.1	Csa5G174660.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105615	CU105615	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G174660	Cucumber (Gy14) v1	cgycuB251
Csa5G174660	Cucumber (Gy14) v1	cgycuB370
Csa5G174660	Melon (DHL92) v3.5.1	cumeB403
Csa5G174660	Watermelon (97103) v1	cuwmB400
Csa5G174660	Bottle gourd (USVL1VR-Ls)	culsiB380
Csa5G174660	Cucumber (Gy14) v2	cgybcuB127
Csa5G174660	Cucumber (Gy14) v2	cgybcuB224
Csa5G174660	Melon (DHL92) v3.6.1	cumedB387