Csa5G174610 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G174610
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ankyrin repeat-containing protein, putative
Location	Chr5 : 7252052 .. 7252591 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATATGTTTTAATTCAGGAGAAAGAATTGAAAATCTTGAAGAAAGGATTAATCTGCATCGAACTGCACTTGTGGGTGATTGGGAAAATGCTCTATCTATTTTGGACGATAACGAATCATTGTTTAACGAGAGACAAGGAGCAAAGCACATCAATTTTGTGGAAAAGCTTGTAAAACAAATGATCAAAGAGGAAGTCTGTAAGAAAAATAGACATAAGAACGCTGCATTATGCTTTGCAGCTGCTTCCGGAGTTGTAATTATTAATTGCATGCTGAGGTTATGGATAATAAGAACAAAGAACTTCCACTTATTCACGGCTTTGGCGATACTCCTCGTTTCGTGGCAGAAGATAACTACACACATTGATGAGGAAATTACAAGATCTATGAAGATTCTGAAGAAATATAGAGAAGCAAAGACCTACGTCCATGGGAAGATTGGAGCAGATTTTTTGTACTTTCTTGGAGAAGATTTCAATTCTTTCTCAGATGAGTTCTTACAACTATCTCGCTCTCTGTTTTACTCACTTTTATAG

mRNA sequence

ATGTCAATATGTTTTAATTCAGGAGAAAGAATTGAAAATCTTGAAGAAAGGATTAATCTGCATCGAACTGCACTTGTGGGTGATTGGGAAAATGCTCTATCTATTTTGGACGATAACGAATCATTGTTTAACGAGAGACAAGGAGCAAAGCACATCAATTTTGTGGAAAAGCTTGTAAAACAAATGATCAAAGAGGAAGTCTGTAAGAAAAATAGACATAAGAACGCTGCATTATGCTTTGCAGCTGCTTCCGGAGTTGTAATTATTAATTGCATGCTGAGGTTATGGATAATAAGAACAAAGAACTTCCACTTATTCACGGCTTTGGCGATACTCCTCGTTTCGTGGCAGAAGATAACTACACACATTGATGAGGAAATTACAAGATCTATGAAGATTCTGAAGAAATATAGAGAAGCAAAGACCTACGTCCATGGGAAGATTGGAGCAGATTTTTTGTACTTTCTTGGAGAAGATTTCAATTCTTTCTCAGATGAGTTCTTACAACTATCTCGCTCTCTGTTTTACTCACTTTTATAG

Coding sequence (CDS)

ATGTCAATATGTTTTAATTCAGGAGAAAGAATTGAAAATCTTGAAGAAAGGATTAATCTGCATCGAACTGCACTTGTGGGTGATTGGGAAAATGCTCTATCTATTTTGGACGATAACGAATCATTGTTTAACGAGAGACAAGGAGCAAAGCACATCAATTTTGTGGAAAAGCTTGTAAAACAAATGATCAAAGAGGAAGTCTGTAAGAAAAATAGACATAAGAACGCTGCATTATGCTTTGCAGCTGCTTCCGGAGTTGTAATTATTAATTGCATGCTGAGGTTATGGATAATAAGAACAAAGAACTTCCACTTATTCACGGCTTTGGCGATACTCCTCGTTTCGTGGCAGAAGATAACTACACACATTGATGAGGAAATTACAAGATCTATGAAGATTCTGAAGAAATATAGAGAAGCAAAGACCTACGTCCATGGGAAGATTGGAGCAGATTTTTTGTACTTTCTTGGAGAAGATTTCAATTCTTTCTCAGATGAGTTCTTACAACTATCTCGCTCTCTGTTTTACTCACTTTTATAG

Protein sequence

MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVKQMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKITTHIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL*

Homology

[Close]

BLAST of Csa5G174610 vs. TrEMBL
Match: A0A0A0KL86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174610 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-96
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60
           MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK
Sbjct: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60

Query: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120
           QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT
Sbjct: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120

Query: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 180
           THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL
Sbjct: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 179

[Close]

BLAST of Csa5G174610 vs. TrEMBL
Match: A0A0A0KRV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.0e-21
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNER------------QGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N SL +               GAKH NFVE
Sbjct: 16  ERKENLEERINLYRTALDGDWDNALYILDHNPSLLSASITRDKETALHIAAGAKHTNFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LVK+M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVKKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of Csa5G174610 vs. TrEMBL
Match: A0A0A0KNG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174600 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 12  ENLEERINLHRTALVGDWENA------------LSILDDNESLFNERQGAKHINFVEKLV 71
           EN+EE+INL+++AL G+WE A             SI  D E   +   GAKH +FV+ LV
Sbjct: 35  ENVEEKINLYQSALEGNWETAEYILMKKRSLLSASITRDKERALHIAAGAKHTDFVKNLV 94

Query: 72  KQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           KQM KEE+  KNRH N ALCFAAASGVV I
Sbjct: 95  KQMNKEEIALKNRHGNTALCFAAASGVVKI 124

[Close]

BLAST of Csa5G174610 vs. TrEMBL
Match: A0A0A0LU19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.0e-09
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 16  ERINLHRTALVGDWENALSILD-------------DNESLFNERQGAKHINFVEKLVKQM 75
           ++I+L+  AL GDWE A SIL              DNE+  +   GAKH+ FVEKL+  M
Sbjct: 112 KKISLYHAALKGDWEKAESILKADTSWSVSNYITRDNETALHIAAGAKHVEFVEKLIDTM 171

Query: 76  IKEEVCKKNRHKNAALCFAAASGVVII 90
             +++   N H N ALCFAA SGVV I
Sbjct: 172 TLDDMVIINTHGNTALCFAATSGVVRI 198

[Close]

BLAST of Csa5G174610 vs. TrEMBL
Match: A0A0A0LWY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059180 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1


Query: 2   SICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNER------------QGA 61
           SI FNS ++   L  ++ L++ A+ GDW+ A SI D + S    +              A
Sbjct: 137 SILFNSTKKKGMLPVQVVLYQAAIKGDWKTAKSIFDVDSSAITMKITGGVDTPLHIAAAA 196

Query: 62  KHINFVEKLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           KHI+FVEKLV++    ++  KN++ + AL FAAASGVV I
Sbjct: 197 KHISFVEKLVEKYSLSDLAIKNKNGDTALAFAAASGVVRI 236

[Close]

BLAST of Csa5G174610 vs. TAIR10
Match: AT5G35830.1 (AT5G35830.1 Ankyrin repeat family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-06
Identity = 31/88 (35.23%), Postives = 44/88 (50.00%), Query Frame = 1


Query: 18  INLHRTALVGDWENALSILDD------------NESLFNERQGAKHINFVEKLVKQMIKE 77
           + L++ AL GDW+ A  I+ +            +E++ +    AKH  FV  L+  +   
Sbjct: 89  VQLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGSLESN 148

Query: 78  EVCKKNRHKNAALCFAAASGVVIINCML 94
           ++  +N   N ALCFAAASGVV I  ML
Sbjct: 149 DLALRNVDGNTALCFAAASGVVEIAKML 176

[Close]

BLAST of Csa5G174610 vs. NCBI nr
Match: gi|700195258|gb|KGN50435.1| (hypothetical protein Csa_5G174610 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60
           MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK
Sbjct: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60

Query: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120
           QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT
Sbjct: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120

Query: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 180
           THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL
Sbjct: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 179

[Close]

BLAST of Csa5G174610 vs. NCBI nr
Match: gi|659073004|ref|XP_008467210.1| (PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNER------------QGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N+SL +               GAKHINFVE
Sbjct: 16  ERKENLEERINLYRTALEGDWDNALYILDRNQSLLSASITRDKETALHIAAGAKHINFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LV++M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVRKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of Csa5G174610 vs. NCBI nr
Match: gi|700195259|gb|KGN50436.1| (hypothetical protein Csa_5G174620 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNER------------QGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N SL +               GAKH NFVE
Sbjct: 16  ERKENLEERINLYRTALDGDWDNALYILDHNPSLLSASITRDKETALHIAAGAKHTNFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LVK+M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVKKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of Csa5G174610 vs. NCBI nr
Match: gi|778700662|ref|XP_011654897.1| (PREDICTED: uncharacterized protein LOC105435455 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNER------------QGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N SL +               GAKH NFVE
Sbjct: 16  ERKENLEERINLYRTALDGDWDNALYILDHNPSLLSASITRDKETALHIAAGAKHTNFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LVK+M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVKKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of Csa5G174610 vs. NCBI nr
Match: gi|700195257|gb|KGN50434.1| (hypothetical protein Csa_5G174600 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 12  ENLEERINLHRTALVGDWENA------------LSILDDNESLFNERQGAKHINFVEKLV 71
           EN+EE+INL+++AL G+WE A             SI  D E   +   GAKH +FV+ LV
Sbjct: 35  ENVEEKINLYQSALEGNWETAEYILMKKRSLLSASITRDKERALHIAAGAKHTDFVKNLV 94

Query: 72  KQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           KQM KEE+  KNRH N ALCFAAASGVV I
Sbjct: 95  KQMNKEEIALKNRHGNTALCFAAASGVVKI 124

The following BLAST results are available for this feature:

BLAST of Csa5G174610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL86_CUCSA	1.5e-96	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174610 PE=4 SV=1	[more]
A0A0A0KRV4_CUCSA	8.0e-21	65.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1	[more]
A0A0A0KNG9_CUCSA	3.2e-14	53.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174600 PE=4 SV=1	[more]
A0A0A0LU19_CUCSA	7.0e-09	44.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1	[more]
A0A0A0LWY1_CUCSA	3.8e-07	39.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059180 PE=4 SV=1	[more]

BLAST of Csa5G174610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35830.1	2.2e-06	35.23	Ankyrin repeat family protein	[more]

BLAST of Csa5G174610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195258\|gb\|KGN50435.1\|	2.2e-96	100.00	hypothetical protein Csa_5G174610 [Cucumis sativus]	[more]
gi\|659073004\|ref\|XP_008467210.1\|	3.0e-21	65.59	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo]	[more]
gi\|700195259\|gb\|KGN50436.1\|	1.1e-20	65.59	hypothetical protein Csa_5G174620 [Cucumis sativus]	[more]
gi\|778700662\|ref\|XP_011654897.1\|	1.1e-20	65.59	PREDICTED: uncharacterized protein LOC105435455 [Cucumis sativus]	[more]
gi\|700195257\|gb\|KGN50434.1\|	4.6e-14	53.33	hypothetical protein Csa_5G174600 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G174610.1	Csa5G174610.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G174610	CSPI05G08510	Wild cucumber (PI 183967)	cpicuB240
Csa5G174610	Cucsa.166280	Cucumber (Gy14) v1	cgycuB251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G174610	Silver-seed gourd	carcuB0756
Csa5G174610	Watermelon (97103) v2	cuwmbB336
Csa5G174610	Wax gourd	cuwgoB445
Csa5G174610	Cucumber (Gy14) v1	cgycuB370
Csa5G174610	Cucurbita maxima (Rimu)	cmacuB291
Csa5G174610	Cucurbita moschata (Rifu)	cmocuB278
Csa5G174610	Melon (DHL92) v3.5.1	cumeB403
Csa5G174610	Melon (DHL92) v3.5.1	cumeB359
Csa5G174610	Watermelon (Charleston Gray)	cuwcgB364
Csa5G174610	Watermelon (97103) v1	cuwmB400
Csa5G174610	Watermelon (97103) v1	cuwmB411
Csa5G174610	Cucurbita pepo (Zucchini)	cpecuB186
Csa5G174610	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G174610	Bottle gourd (USVL1VR-Ls)	culsiB380
Csa5G174610	Cucumber (Gy14) v2	cgybcuB127
Csa5G174610	Cucumber (Gy14) v2	cgybcuB224
Csa5G174610	Melon (DHL92) v3.6.1	cumedB339
Csa5G174610	Melon (DHL92) v3.6.1	cumedB387