Csa5G171140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G171140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 6830669 .. 6832447 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCTTTTCCGTGCGAGGCTAGACAGTAAGGGAAAACGTTAAATTACAAAGAATATCCCTATGATCAATCACGAAAGGGGGCACGAGAAAAATGACTAACCGTAGAAAAGTGACACTCAATAATTTTGTTCCCTGTGCTTGTTCCATGTATAAGAGAGATATTTGGTATCTACCTTGTTTCATGTCGCTTGGATTCCTTCTGCTTTCCATTGGAAATAAACATTTCTTTGTTGCGGCTACCTCCTCCTATTGAAATCTCTATTTATGATAAATGAATGAAAGGTTTGAGCTTCCTTGCTTCACTTGTAAATCCAAAAGAACAAAGACCGAAGATAACTGCACATTGTGTGGACCGAAAAACACTGATGCCACTTCTTAAGCAGTCAAGCAATAACTTTGATGCACAAAGGAATCTCCTTGCCTTGCAAAGATTGTGCATCAGAGAGGTGTAGACATAAGGATCCTTTGTTTCCATTAATTCAAACAGTTGCATTGCTTGGTCAATTTGTCCAGCCTTACATAACCTATCAATTAGACAACTCGAGGCTACCACGTTTGAATTAGTAAAACCTGTTGGATAGATATAATTCAAATGTCGTCGAGCCCCCTCAAAATTGCCAACCTTACATAACCCATCAGTGATTATAGCATGTGTGTAATCGTTGCATTGTAATCCCCGTGACTCTATCTTATCCAACATCTTATGTGCAGCCTCCAATTTACCATGTTTACAGTACAAATTAACAACTGTGTTATAAAAAACTAAATTAAATACCACTCCATTCTTTATCATCTCTACCATAAAAAATTTTGCCTCTTCAAGCCTACCTAACCGAAGTAAAGCACCAATAGCAGTGTAGTAACCAAAACCATTAAAAGCAAGGCCCTTGTTTTTCATTTCAAAGAATATCTCGAATCCATGTTGATACTCTCTAAATTTGAAGCAACATTTCATCAACGCAATGTATGTAGTAGAATCGGGCTCAAAACCTGAATCGATGGCCTCATTGAACATACTCATAGCCTCGTTGAACATACTTACAGAGACATTCAACCTAGCCGCCTTGCAAAGTCCAGTAAGAAGAATGTCATATGTAACAAATTTAGGAACAAGTCCATGGCTCTGCAAATTTCTAAACAACGTAATAGCATTACTTGTATATCCACAACTGCAAAAGCCGAAAATCATCACATCAAACGTAGCAGGATTAGGGGAGTGGTCTTTAAGTATAAAATCCAAAAAAATGCTATTAGCTTCATCTGGCTTTCCTACTTTAAGGAAACAGTGGGTCAAAGTGGTGTAACTCCATACATCAGGAGTGATACCTAATTGAAGCATTTCATGAAACAGATTAAGGCATTGTTCTAATGAAGAATTTCTGGATGCAGCAGCCATCAAAGAAGTATAAATAAACACATTTGGAGTAATGCCAGCGTCCCTCATTTTATGAAAGACAGAATAAGCAGCATCCATGTCGCTAAATTGGCAATACCCATTAATCAAAATATTGTAAGTTAGTATGTCGGGAACAACTCCTAAACGAATGGCATCTTTAATAGCAATTTCAGCTTTCTGAAATTGGTGAGATTTACAAAATGAGGCGACACAAATAGTCAACAACTTGGTAGAATATTTGGAAACCATACTTCGAACTAACCTTTGAGAAGAATGAAACTGAGATGGAGGCGGAGGCGGCGACGGCGACGGGAGAAAGATGGTGAAGTGCGAGGGCGGAAGGAAGGAAGTGAGATTAGGTTTTATAAAATTTGGACACTTA

mRNA sequence

ATGTATGTAGTAGAATCGGGCTCAAAACCTGAATCGATGGCCTCATTGAACATACTCATAGCCTCGTTGAACATACTTACAGAGACATTCAACCTAGCCGCCTTGCAAAGTCCAGTAAGAAGAATGTCATATGTAACAAATTTAGGAACAAGTCCATGGCTCTGCAAATTTCTAAACAACGTAATAGCATTACTTGTATATCCACAACTGCAAAAGCCGAAAATCATCACATCAAACGTAGCAGGATTAGGGGAGTGGTCTTTAAGTATAAAATCCAAAAAAATGCTATTAGCTTCATCTGGCTTTCCTACTTTAAGGAAACAGTGGGTCAAAGTGGTGTAA

Coding sequence (CDS)

ATGTATGTAGTAGAATCGGGCTCAAAACCTGAATCGATGGCCTCATTGAACATACTCATAGCCTCGTTGAACATACTTACAGAGACATTCAACCTAGCCGCCTTGCAAAGTCCAGTAAGAAGAATGTCATATGTAACAAATTTAGGAACAAGTCCATGGCTCTGCAAATTTCTAAACAACGTAATAGCATTACTTGTATATCCACAACTGCAAAAGCCGAAAATCATCACATCAAACGTAGCAGGATTAGGGGAGTGGTCTTTAAGTATAAAATCCAAAAAAATGCTATTAGCTTCATCTGGCTTTCCTACTTTAAGGAAACAGTGGGTCAAAGTGGTGTAA

Protein sequence

MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNNVIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV*
Homology
[Close]
BLAST of Csa5G171140 vs. TrEMBL
Match: A0A0A0KRN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171140 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNN 60
           MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNN
Sbjct: 1   MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNN 60

Query: 61  VIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV 114
           VIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV
Sbjct: 61  VIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV 113

[Close]
BLAST of Csa5G171140 vs. NCBI nr
Match: gi|700195204|gb|KGN50381.1| (hypothetical protein Csa_5G171140 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.5e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNN 60
           MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNN
Sbjct: 1   MYVVESGSKPESMASLNILIASLNILTETFNLAALQSPVRRMSYVTNLGTSPWLCKFLNN 60

Query: 61  VIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV 114
           VIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV
Sbjct: 61  VIALLVYPQLQKPKIITSNVAGLGEWSLSIKSKKMLLASSGFPTLRKQWVKVV 113

The following BLAST results are available for this feature:
BLAST of Csa5G171140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRN2_CUCSA3.1e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171140 PE=4 SV=1[more]
BLAST of Csa5G171140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195204|gb|KGN50381.1|4.5e-55100.00hypothetical protein Csa_5G171140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU116696cucumber EST collection version 3.0transcribed_cluster
CU137447cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G171140.1Csa5G171140.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU116696CU116696transcribed_cluster
CU137447CU137447transcribed_cluster