Csa5G165240 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G165240
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 6266806 .. 6267030 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGCGCTTCGGCTCTTCATCTCTCTCATATAAGTTCGGCGACCACGGAGCCCATTAGCACATTTCACACCAAAAGAAACAAACTCATTCTTCTTCTTTCTCTTTCTCCTCCGCTCACGGTGGCTCCGCCGAGCTTCCACGACTATCTCGACTCTCAGCTCATTCATCTCTACAAGCCACAGAAGTTCGTTTCACAACGTTTTTGTACTTACAGATTGTGA

mRNA sequence

ATGAACCGCGCTTCGGCTCTTCATCTCTCTCATATAAGTTCGGCGACCACGGAGCCCATTAGCACATTTCACACCAAAAGAAACAAACTCATTCTTCTTCTTTCTCTTTCTCCTCCGCTCACGGTGGCTCCGCCGAGCTTCCACGACTATCTCGACTCTCAGCTCATTCATCTCTACAAGCCACAGAAGTTCGTTTCACAACGTTTTTGTACTTACAGATTGTGA

Coding sequence (CDS)

ATGAACCGCGCTTCGGCTCTTCATCTCTCTCATATAAGTTCGGCGACCACGGAGCCCATTAGCACATTTCACACCAAAAGAAACAAACTCATTCTTCTTCTTTCTCTTTCTCCTCCGCTCACGGTGGCTCCGCCGAGCTTCCACGACTATCTCGACTCTCAGCTCATTCATCTCTACAAGCCACAGAAGTTCGTTTCACAACGTTTTTGTACTTACAGATTGTGA

Protein sequence

MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYKPQKFVSQRFCTYRL*

Homology

[Close]

BLAST of Csa5G165240 vs. TrEMBL
Match: A0A0A0KN00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165240 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYK 60
          MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYK
Sbjct: 1  MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYK 60

Query: 61 PQKFVSQRFCTYRL 75
          PQKFVSQRFCTYRL
Sbjct: 61 PQKFVSQRFCTYRL 74

[Close]

BLAST of Csa5G165240 vs. NCBI nr
Match: gi|700195102|gb|KGN50279.1| (hypothetical protein Csa_5G165240 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYK 60
          MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYK
Sbjct: 1  MNRASALHLSHISSATTEPISTFHTKRNKLILLLSLSPPLTVAPPSFHDYLDSQLIHLYK 60

Query: 61 PQKFVSQRFCTYRL 75
          PQKFVSQRFCTYRL
Sbjct: 61 PQKFVSQRFCTYRL 74

The following BLAST results are available for this feature:

BLAST of Csa5G165240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN00_CUCSA	2.6e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165240 PE=4 SV=1	[more]

BLAST of Csa5G165240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195102\|gb\|KGN50279.1\|	3.8e-34	100.00	hypothetical protein Csa_5G165240 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU138600	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G165240.1	Csa5G165240.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU138600	CU138600	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G165240	CSPI05G07060	Wild cucumber (PI 183967)	cpicuB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G165240	Melon (DHL92) v3.6.1	cumedB336
Csa5G165240	Silver-seed gourd	carcuB0573
Csa5G165240	Silver-seed gourd	carcuB0799
Csa5G165240	Watermelon (97103) v2	cuwmbB336
Csa5G165240	Wax gourd	cuwgoB438
Csa5G165240	Cucumber (Chinese Long) v2	cucuB099
Csa5G165240	Cucumber (Gy14) v1	cgycuB178
Csa5G165240	Cucurbita maxima (Rimu)	cmacuB298
Csa5G165240	Cucurbita maxima (Rimu)	cmacuB610
Csa5G165240	Cucurbita moschata (Rifu)	cmocuB286
Csa5G165240	Cucurbita moschata (Rifu)	cmocuB600
Csa5G165240	Melon (DHL92) v3.5.1	cumeB357
Csa5G165240	Watermelon (Charleston Gray)	cuwcgB364
Csa5G165240	Watermelon (97103) v1	cuwmB415
Csa5G165240	Cucurbita pepo (Zucchini)	cpecuB174
Csa5G165240	Cucurbita pepo (Zucchini)	cpecuB738
Csa5G165240	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G165240	Cucumber (Gy14) v2	cgybcuB224