Csa5G161930 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G161930
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionL-lactate dehydrogenase, putative; contains IPR001557 (L-lactate/malate dehydrogenase)
LocationChr5 : 6069086 .. 6070087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGATTACAATAAGTACTCATTTATAACAACATTTTAAAAATGGTAAATACAACAAGTATGTTGTTAATCGATCAATATTTACAATATAGTAACTCCAACTGTTTTTGTTGTATTTACAATTTTTAAAAATTATTGCTATATAGGTTAATACTTTAAATTTAATTGTTATGTTTGTAATTGTTTGACCCACACCTGCAATAGTGTGAAGTTGGGATAGGGATTTGGCAATGTTAAATGGGAAAAGTGTAAAAAAAGATATCACATCGGGTTATGACATCGGATCAGGGATAAGCCACTATTGGATTGGGAAGTTCATCCCTATCACGATGTCACTTAGAAGGCTAGAAGTGCACTACCATGTAGTTTAGTTACCAAAGTGAAAAATAAATTCAAAGTTCACCCAATTAGAATTCTGACCATCGTTTAGGTTCTTAAAGTATGTATTGATCAAATCATAGATGAATGTCTAGAAATTAAACTAGCATTGATATTGATACTTAGATCATGAAGCTAAAAAACAGTGGATTATATATATATATATCTGTATGTTTTTGAAGGCATACATAGTTGGAGAGCATGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGTGTGGGCGGGGTGCCGATCCTAAGCTTTCTAAAGAATCAACAAATCGGCTACGAAAAAGAAACATTAGAGAAAATTCACAAAGAGGTTATAGGTGGGGCTTACGAAGTCATAAACCTTAAGGGCTACACATCATGGGCGATCGGGTACTCCGTTGCGAGTTTAGCTCGGTCGATCCTTCGAGACCAAAGGAGGATCCATCCTGTCTCTGTTCTCGCAAAAGGGTTTTACGGTATTGATGGTGGCGACTTGTTCCTTAGCCTGCCTGCACAACTTGGGAGGGGTGGAGTATTGGGGATCACCAATGTGCATCTAACGGCAGAGGAATCGAAACGGTTGAGGGACTCGGCAAACACCATCTTGCAGGTGCAAACCGAGTTGGGGATTTAA

mRNA sequence

ATGTTTTTGAAGGCATACATAGTTGGAGAGCATGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGTGTGGGCGGGGTGCCGATCCTAAGCTTTCTAAAGAATCAACAAATCGGCTACGAAAAAGAAACATTAGAGAAAATTCACAAAGAGGTTATAGGTGGGGCTTACGAAGTCATAAACCTTAAGGGCTACACATCATGGGCGATCGGGTACTCCGTTGCGAGTTTAGCTCGGTCGATCCTTCGAGACCAAAGGAGGATCCATCCTGTCTCTGTTCTCGCAAAAGGGTTTTACGGTATTGATGGTGGCGACTTGTTCCTTAGCCTGCCTGCACAACTTGGGAGGGGTGGAGTATTGGGGATCACCAATGTGCATCTAACGGCAGAGGAATCGAAACGGTTGAGGGACTCGGCAAACACCATCTTGCAGGTGCAAACCGAGTTGGGGATTTAA

Coding sequence (CDS)

ATGTTTTTGAAGGCATACATAGTTGGAGAGCATGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGTGTGGGCGGGGTGCCGATCCTAAGCTTTCTAAAGAATCAACAAATCGGCTACGAAAAAGAAACATTAGAGAAAATTCACAAAGAGGTTATAGGTGGGGCTTACGAAGTCATAAACCTTAAGGGCTACACATCATGGGCGATCGGGTACTCCGTTGCGAGTTTAGCTCGGTCGATCCTTCGAGACCAAAGGAGGATCCATCCTGTCTCTGTTCTCGCAAAAGGGTTTTACGGTATTGATGGTGGCGACTTGTTCCTTAGCCTGCCTGCACAACTTGGGAGGGGTGGAGTATTGGGGATCACCAATGTGCATCTAACGGCAGAGGAATCGAAACGGTTGAGGGACTCGGCAAACACCATCTTGCAGGTGCAAACCGAGTTGGGGATTTAA

Protein sequence

MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGITNVHLTAEESKRLRDSANTILQVQTELGI*
Homology
[Close]
BLAST of Csa5G161930 vs. Swiss-Prot
Match: LDHA_HORVU (L-lactate dehydrogenase A OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-46
Identity = 91/141 (64.54%), Postives = 113/141 (80.14%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AY+VGEHGDSSVA+WSSISVGG+P    L++    +++  LE I + V+GGAYEVI L
Sbjct: 207 VQAYMVGEHGDSSVAIWSSISVGGMPAFKSLRDSHRSFDEAALEGIRRAVVGGAYEVIGL 266

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGI-DGGDLFLSLPAQLGRGGVLG 122
           KGYTSWAIGYSVASLA S+LRDQRR+HPVSVLA GF+GI DG ++FLSLPA+LGRGG+LG
Sbjct: 267 KGYTSWAIGYSVASLAASLLRDQRRVHPVSVLASGFHGISDGHEVFLSLPARLGRGGILG 326

Query: 123 ITNVHLTAEESKRLRDSANTI 143
           +  + LT  E+ +LR SA T+
Sbjct: 327 VAEMDLTEAEAAQLRRSAKTL 347

[Close]
BLAST of Csa5G161930 vs. Swiss-Prot
Match: LDHB_HORVU (L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-46
Identity = 94/150 (62.67%), Postives = 117/150 (78.00%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AY+VGEHGDSSVA+WSSISVGG+P L  L++    +++  LE I + V+GGAYEVI L
Sbjct: 195 VQAYMVGEHGDSSVAIWSSISVGGMPALKSLRDSHRSFDEAALEGIRRAVVGGAYEVIGL 254

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGI-DGGDLFLSLPAQLGRGGVLG 122
           KGYTSWAIGYSVASLA S+LRDQRR+HPVSVLA GF+GI DG ++FLSLPA+LGR GVLG
Sbjct: 255 KGYTSWAIGYSVASLATSLLRDQRRVHPVSVLAAGFHGISDGHEVFLSLPARLGRAGVLG 314

Query: 123 ITNVHLTAEESKRLRDSANTILQVQTELGI 152
           +  + LT  E+ +LR SA T+ +    LG+
Sbjct: 315 VAEMDLTEAEAAQLRRSAKTLWENCQLLGL 344

[Close]
BLAST of Csa5G161930 vs. Swiss-Prot
Match: LDH_MAIZE (L-lactate dehydrogenase OS=Zea mays PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.5e-37
Identity = 86/150 (57.33%), Postives = 107/150 (71.33%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AY+VGEHGDSSVA+WSS+SV G+P+L  L+     +++E LE I + V+  AYEVI+L
Sbjct: 206 VQAYMVGEHGDSSVAVWSSVSVAGMPVLKSLQESHRCFDEEALEGIRRAVVDSAYEVISL 265

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGI-DGGDLFLSLPAQLGRGGVLG 122
           KGYTSWAIGYSVASLA S+LRDQRRIHPVSVLA+GF+GI DG     + P +  R    G
Sbjct: 266 KGYTSWAIGYSVASLAASLLRDQRRIHPVSVLARGFHGIPDGTTSSSACPPRRPRRRP-G 325

Query: 123 ITNVHLTAEESKRLRDSANTILQVQTELGI 152
              + LT EE+KRLR SA TI +    LG+
Sbjct: 326 RREMELTEEEAKRLRRSAKTIWENCQLLGL 354

[Close]
BLAST of Csa5G161930 vs. Swiss-Prot
Match: LDHC_PIG (L-lactate dehydrogenase C chain OS=Sus scrofa GN=LDHC PE=2 SV=3)

HSP 1 Score: 147.9 bits (372), Expect = 9.0e-35
Identity = 75/144 (52.08%), Postives = 95/144 (65.97%), Query Frame = 1 

Query: 6   YIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINLKGY 65
           +I+GEHGDSSV LWS ++V GV + +         +K+  + IHK+VIG AYE+I LKGY
Sbjct: 188 WIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKDQWKNIHKQVIGSAYEIIKLKGY 247

Query: 66  TSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGITNV 125
           TSWAIG SV  L  SIL++ RR+HPVS + KG YGI   ++FLS+P  LGR GV  I  V
Sbjct: 248 TSWAIGLSVTDLVGSILKNLRRVHPVSTMVKGLYGIK-EEIFLSIPCVLGRNGVSDIVKV 307

Query: 126 HLTAEESKRLRDSANTILQVQTEL 150
           +L AEE    + SANT+  VQ +L
Sbjct: 308 NLNAEEEALFKKSANTLWNVQKDL 330

[Close]
BLAST of Csa5G161930 vs. Swiss-Prot
Match: LDHA_MOUSE (L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3)

HSP 1 Score: 147.9 bits (372), Expect = 9.0e-35
Identity = 72/144 (50.00%), Postives = 99/144 (68.75%), Query Frame = 1 

Query: 6   YIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINLKGY 65
           +++GEHGDSSV +WS ++V GV + S         +KE  +++HK+V+  AYEVI LKGY
Sbjct: 188 WVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGY 247

Query: 66  TSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGITNV 125
           TSWAIG SVA LA SI+++ RR+HP+S + KG YGI+  D+FLS+P  LG+ G+  +  V
Sbjct: 248 TSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIN-EDVFLSVPCILGQNGISDVVKV 307

Query: 126 HLTAEESKRLRDSANTILQVQTEL 150
            LT EE  RL+ SA+T+  +Q EL
Sbjct: 308 TLTPEEEARLKKSADTLWGIQKEL 330

[Close]
BLAST of Csa5G161930 vs. TrEMBL
Match: A0A0A0KMW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161930 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVI 60
           MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVI
Sbjct: 1   MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVI 60

Query: 61  NLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVL 120
           NLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVL
Sbjct: 61  NLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVL 120

Query: 121 GITNVHLTAEESKRLRDSANTILQVQTELGI 152
           GITNVHLTAEESKRLRDSANTILQVQTELGI
Sbjct: 121 GITNVHLTAEESKRLRDSANTILQVQTELGI 151

[Close]
BLAST of Csa5G161930 vs. TrEMBL
Match: A0A0A0KKU9_CUCSA (L-lactate dehydrogenase OS=Cucumis sativus GN=Csa_5G161920 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.6e-73
Identity = 141/149 (94.63%), Postives = 146/149 (97.99%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++A+IVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL
Sbjct: 264 VQAFIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 323

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVASLARSILRDQRRIHPVSV+AKGFYGI+GGDLFLSLPAQLGRGGVLGI
Sbjct: 324 KGYTSWAIGYSVASLARSILRDQRRIHPVSVIAKGFYGIEGGDLFLSLPAQLGRGGVLGI 383

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLT EESKRLRDSANTIL VQ ELGI
Sbjct: 384 TNVHLTTEESKRLRDSANTILHVQAELGI 412

[Close]
BLAST of Csa5G161930 vs. TrEMBL
Match: A0A151TJG6_CAJCA (L-lactate dehydrogenase OS=Cajanus cajan GN=KK1_013505 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-65
Identity = 125/149 (83.89%), Postives = 142/149 (95.30%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++A+IVGEHGDSSVALWSSISVGGVP+LSFL+ Q+I YE+E LEKIHKEVI GAYEVI+L
Sbjct: 202 VQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEREMLEKIHKEVIQGAYEVISL 261

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVA+LARSILR+QRR+HPVSVLAKGFYGIDGG++FLSLPAQLGRGGVLG+
Sbjct: 262 KGYTSWAIGYSVANLARSILRNQRRVHPVSVLAKGFYGIDGGEVFLSLPAQLGRGGVLGV 321

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLT EES+RLRDSANTIL+VQ +L I
Sbjct: 322 TNVHLTEEESQRLRDSANTILEVQNQLAI 350

[Close]
BLAST of Csa5G161930 vs. TrEMBL
Match: A0A103XG52_CYNCS (L-lactate dehydrogenase OS=Cynara cardunculus var. scolymus GN=Ccrd_007832 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.4e-65
Identity = 126/149 (84.56%), Postives = 141/149 (94.63%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AYIVGEHGDSSVALWSSISVGGVPILSFL+ QQI YEK+TLEKIHKEV+ GAYEVI+L
Sbjct: 202 VQAYIVGEHGDSSVALWSSISVGGVPILSFLERQQIAYEKQTLEKIHKEVVQGAYEVISL 261

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVASLARSILRDQR IHPVSVLAKGFYGIDGG+ FLSLPAQLGR GVLG+
Sbjct: 262 KGYTSWAIGYSVASLARSILRDQRSIHPVSVLAKGFYGIDGGEPFLSLPAQLGRSGVLGV 321

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLT EES++LR+SA TIL+VQ++LG+
Sbjct: 322 TNVHLTEEESQQLRESAKTILEVQSQLGV 350

[Close]
BLAST of Csa5G161930 vs. TrEMBL
Match: V4T0C0_9ROSI (L-lactate dehydrogenase OS=Citrus clementina GN=CICLE_v10020910mg PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.9e-65
Identity = 124/149 (83.22%), Postives = 139/149 (93.29%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AYIVGEHGDSSVALWSSISVGGVPILSFL+ QQI YEKETLE IHKEV+  AYEVI+L
Sbjct: 202 VQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL 261

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYS A+LARSI+RDQR+IHPVSVLAKGFYGIDGGD+FLSLPAQLGRGGVLG+
Sbjct: 262 KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGV 321

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TN+HL  EES RLR+SA TIL+VQ++LGI
Sbjct: 322 TNIHLNQEESHRLRNSAKTILEVQSQLGI 350

[Close]
BLAST of Csa5G161930 vs. TAIR10
Match: AT4G17260.1 (AT4G17260.1 Lactate/malate dehydrogenase family protein)

HSP 1 Score: 232.3 bits (591), Expect = 2.0e-61
Identity = 108/149 (72.48%), Postives = 134/149 (89.93%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++A+IVGEHGDSSVALWSSISVGG+P+LSFL+  QI YEK+TLE IH+ V+G AYEVI L
Sbjct: 205 VQAFIVGEHGDSSVALWSSISVGGIPVLSFLEKNQIAYEKQTLEDIHQAVVGSAYEVIGL 264

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVA+LAR+ILRDQR+IHPV+VLA+GFYG+DGGD+FLSLPA LGR GV+ +
Sbjct: 265 KGYTSWAIGYSVANLARTILRDQRKIHPVTVLARGFYGVDGGDVFLSLPALLGRNGVVAV 324

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVH+T EE+++L+ SA TIL++Q++LG+
Sbjct: 325 TNVHMTDEEAEKLQKSAKTILEMQSQLGL 353

[Close]
BLAST of Csa5G161930 vs. NCBI nr
Match: gi|700195067|gb|KGN50244.1| (hypothetical protein Csa_5G161930 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVI 60
           MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVI
Sbjct: 1   MFLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVI 60

Query: 61  NLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVL 120
           NLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVL
Sbjct: 61  NLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVL 120

Query: 121 GITNVHLTAEESKRLRDSANTILQVQTELGI 152
           GITNVHLTAEESKRLRDSANTILQVQTELGI
Sbjct: 121 GITNVHLTAEESKRLRDSANTILQVQTELGI 151

[Close]
BLAST of Csa5G161930 vs. NCBI nr
Match: gi|778700018|ref|XP_004151663.2| (PREDICTED: LOW QUALITY PROTEIN: L-lactate dehydrogenase A-like [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL
Sbjct: 202 VQAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 261

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI
Sbjct: 262 KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 321

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLTAEESKRLRDSANTILQVQTELGI
Sbjct: 322 TNVHLTAEESKRLRDSANTILQVQTELGI 350

[Close]
BLAST of Csa5G161930 vs. NCBI nr
Match: gi|659073513|ref|XP_008437100.1| (PREDICTED: L-lactate dehydrogenase B [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 8.9e-75
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++AYIVGEHGDSSVALWSSISVGGVPILSFLKNQQI YEKETLEKIHKEVIGGAYEVINL
Sbjct: 284 VQAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIAYEKETLEKIHKEVIGGAYEVINL 343

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI
Sbjct: 344 KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 403

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLTAEESKRLRDSANTILQVQTELGI
Sbjct: 404 TNVHLTAEESKRLRDSANTILQVQTELGI 432

[Close]
BLAST of Csa5G161930 vs. NCBI nr
Match: gi|778700014|ref|XP_011654796.1| (PREDICTED: L-lactate dehydrogenase B-like [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 141/149 (94.63%), Postives = 146/149 (97.99%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++A+IVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL
Sbjct: 264 VQAFIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 323

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVASLARSILRDQRRIHPVSV+AKGFYGI+GGDLFLSLPAQLGRGGVLGI
Sbjct: 324 KGYTSWAIGYSVASLARSILRDQRRIHPVSVIAKGFYGIEGGDLFLSLPAQLGRGGVLGI 383

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLT EESKRLRDSANTIL VQ ELGI
Sbjct: 384 TNVHLTTEESKRLRDSANTILHVQAELGI 412

[Close]
BLAST of Csa5G161930 vs. NCBI nr
Match: gi|1012355995|gb|KYP67182.1| (L-lactate dehydrogenase A [Cajanus cajan])

HSP 1 Score: 256.1 bits (653), Expect = 3.7e-65
Identity = 125/149 (83.89%), Postives = 142/149 (95.30%), Query Frame = 1 

Query: 3   LKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIGYEKETLEKIHKEVIGGAYEVINL 62
           ++A+IVGEHGDSSVALWSSISVGGVP+LSFL+ Q+I YE+E LEKIHKEVI GAYEVI+L
Sbjct: 202 VQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEREMLEKIHKEVIQGAYEVISL 261

Query: 63  KGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGI 122
           KGYTSWAIGYSVA+LARSILR+QRR+HPVSVLAKGFYGIDGG++FLSLPAQLGRGGVLG+
Sbjct: 262 KGYTSWAIGYSVANLARSILRNQRRVHPVSVLAKGFYGIDGGEVFLSLPAQLGRGGVLGV 321

Query: 123 TNVHLTAEESKRLRDSANTILQVQTELGI 152
           TNVHLT EES+RLRDSANTIL+VQ +L I
Sbjct: 322 TNVHLTEEESQRLRDSANTILEVQNQLAI 350

The following BLAST results are available for this feature:
BLAST of Csa5G161930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LDHA_HORVU2.3e-4664.54L-lactate dehydrogenase A OS=Hordeum vulgare PE=1 SV=1[more]
LDHB_HORVU2.3e-4662.67L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1[more]
LDH_MAIZE2.5e-3757.33L-lactate dehydrogenase OS=Zea mays PE=2 SV=1[more]
LDHC_PIG9.0e-3552.08L-lactate dehydrogenase C chain OS=Sus scrofa GN=LDHC PE=2 SV=3[more]
LDHA_MOUSE9.0e-3550.00L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3[more]
BLAST of Csa5G161930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMW7_CUCSA1.0e-77100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161930 PE=4 SV=1[more]
A0A0A0KKU9_CUCSA7.6e-7394.63L-lactate dehydrogenase OS=Cucumis sativus GN=Csa_5G161920 PE=3 SV=1[more]
A0A151TJG6_CAJCA2.6e-6583.89L-lactate dehydrogenase OS=Cajanus cajan GN=KK1_013505 PE=3 SV=1[more]
A0A103XG52_CYNCS4.4e-6584.56L-lactate dehydrogenase OS=Cynara cardunculus var. scolymus GN=Ccrd_007832 PE=3 ... [more]
V4T0C0_9ROSI9.9e-6583.22L-lactate dehydrogenase OS=Citrus clementina GN=CICLE_v10020910mg PE=3 SV=1[more]
BLAST of Csa5G161930 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17260.12.0e-6172.48 Lactate/malate dehydrogenase family protein[more]
BLAST of Csa5G161930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195067|gb|KGN50244.1|1.5e-77100.00hypothetical protein Csa_5G161930 [Cucumis sativus][more]
gi|778700018|ref|XP_004151663.2|1.8e-7598.66PREDICTED: LOW QUALITY PROTEIN: L-lactate dehydrogenase A-like [Cucumis sativus][more]
gi|659073513|ref|XP_008437100.1|8.9e-7597.99PREDICTED: L-lactate dehydrogenase B [Cucumis melo][more]
gi|778700014|ref|XP_011654796.1|1.1e-7294.63PREDICTED: L-lactate dehydrogenase B-like [Cucumis sativus][more]
gi|1012355995|gb|KYP67182.1|3.7e-6583.89L-lactate dehydrogenase A [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001557L-lactate/malate_DH
IPR015955Lactate_DH/Glyco_Ohase_4_C
IPR018177L-lactate_DH_AS
IPR022383Lactate/malate_DH_C
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0003824catalytic activity
GO:0004459L-lactate dehydrogenase activity
Vocabulary: Biological Process
TermDefinition
GO:0019752carboxylic acid metabolic process
GO:0055114oxidation-reduction process
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0019752 carboxylic acid metabolic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
molecular_function GO:0004459 L-lactate dehydrogenase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU105296cucumber EST collection version 3.0transcribed_cluster
CU169670cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G161930.1Csa5G161930.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105296CU105296transcribed_cluster
CU169670CU169670transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001557L-lactate/malate dehydrogenasePANTHERPTHR11540MALATE AND LACTATE DEHYDROGENASEcoord: 5..149
score: 1.5
IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalGENE3DG3DSA:3.90.110.10coord: 4..149
score: 2.3
IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalunknownSSF56327LDH C-terminal domain-likecoord: 4..148
score: 1.14
IPR018177L-lactate dehydrogenase, active sitePROSITEPS00064L_LDHcoord: 8..14
scor
IPR022383Lactate/malate dehydrogenase, C-terminalPFAMPF02866Ldh_1_Ccoord: 4..144
score: 5.2
NoneNo IPR availablePANTHERPTHR11540:SF3L-LACTATE DEHYDROGENASEcoord: 5..149
score: 1.5