Csa5G161330 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G161330
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 6014351 .. 6014886 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAGCATGAAGAGAGGCAAACTTCCGATGCAGTAGCAAAGACGTCGGGAAAGCATGGGCTACATCCGATGTCATGCATGCATGAATTGACAGAAAATAATCATTTAAATAATGATTGTGTTTATCCCGACTCTATGCATGTATGCATTGGGATTTGTAGGGCTACTCCTGACGTCGTACATGCATCCGTTGGCAGAAAAAAAAATCATTTTAATAATGAGTATTATGTTTATCCTAACACCACGCATATGTGCGTTAGGATTTGGATGGGACCCTCCTGACGAATGCTTTGGGAGTAGTTGGGAACTCCCAACGCGTATCGTGGTGTGTCAGAAGTTTTCTCTTTAAAAACTCTCTTCCAGATCTAGAAGAGAAAAGGAGAAGATCAGAGAAGAACGAGAAAGTGCGCGAGAATAGAAACGACCACCACCCGCCGCCCTATGCCATTGTTGTTCGTTGTGCCTCGGTCGTCGCCTTCTTCTTCAATAACTATAGATTTTTGTTTTGTTTTTTTCCTCTTTATTATTTTTGA

mRNA sequence

ATGTGTCAGCATGAAGAGAGGCAAACTTCCGATGCAGTAGCAAAGACGTCGGGAAAGCATGGGCTACATCCGATGTCATGCATGCATGAATTGACAGAAAATAATCATTTAAATAATGATTGTGTTTATCCCGACTCTATGCATGTATGCATTGGGATTTGTAGGGCTACTCCTGACGTCGATTTGGATGGGACCCTCCTGACGAATGCTTTGGGAGTAGTTGGGAACTCCCAACGCGTATCGTGGTGTGTCAGAAGTTTTCTCTTTAAAAACTCTCTTCCAGATCTAGAAGAGAAAAGGAGAAGATCAGAGAAGAACGAGAAAGTGCGCGAGAATAGAAACGACCACCACCCGCCGCCCTATGCCATTGTTGTTCGTTGTGCCTCGGTCGTCGCCTTCTTCTTCAATAACTATAGATTTTTGTTTTGTTTTTTTCCTCTTTATTATTTTTGA

Coding sequence (CDS)

ATGTGTCAGCATGAAGAGAGGCAAACTTCCGATGCAGTAGCAAAGACGTCGGGAAAGCATGGGCTACATCCGATGTCATGCATGCATGAATTGACAGAAAATAATCATTTAAATAATGATTGTGTTTATCCCGACTCTATGCATGTATGCATTGGGATTTGTAGGGCTACTCCTGACGTCGATTTGGATGGGACCCTCCTGACGAATGCTTTGGGAGTAGTTGGGAACTCCCAACGCGTATCGTGGTGTGTCAGAAGTTTTCTCTTTAAAAACTCTCTTCCAGATCTAGAAGAGAAAAGGAGAAGATCAGAGAAGAACGAGAAAGTGCGCGAGAATAGAAACGACCACCACCCGCCGCCCTATGCCATTGTTGTTCGTTGTGCCTCGGTCGTCGCCTTCTTCTTCAATAACTATAGATTTTTGTTTTGTTTTTTTCCTCTTTATTATTTTTGA

Protein sequence

MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDVDLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPPYAIVVRCASVVAFFFNNYRFLFCFFPLYYF*
Homology
[Close]
BLAST of Csa5G161330 vs. TrEMBL
Match: A0A0A0KKU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161330 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.0e-85
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 

Query: 1   MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDV 60
           MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDV
Sbjct: 1   MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDV 60

Query: 61  DLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPP 120
           DLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPP
Sbjct: 61  DLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPP 120

Query: 121 YAIVVRCASVVAFFFNNYRFLFCFFPLYYF 151
           YAIVVRCASVVAFFFNNYRFLFCFFPLYYF
Sbjct: 121 YAIVVRCASVVAFFFNNYRFLFCFFPLYYF 150

[Close]
BLAST of Csa5G161330 vs. NCBI nr
Match: gi|700195056|gb|KGN50233.1| (hypothetical protein Csa_5G161330 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 

Query: 1   MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDV 60
           MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDV
Sbjct: 1   MCQHEERQTSDAVAKTSGKHGLHPMSCMHELTENNHLNNDCVYPDSMHVCIGICRATPDV 60

Query: 61  DLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPP 120
           DLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPP
Sbjct: 61  DLDGTLLTNALGVVGNSQRVSWCVRSFLFKNSLPDLEEKRRRSEKNEKVRENRNDHHPPP 120

Query: 121 YAIVVRCASVVAFFFNNYRFLFCFFPLYYF 151
           YAIVVRCASVVAFFFNNYRFLFCFFPLYYF
Sbjct: 121 YAIVVRCASVVAFFFNNYRFLFCFFPLYYF 150

The following BLAST results are available for this feature:
BLAST of Csa5G161330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKU2_CUCSA1.0e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161330 PE=4 SV=1[more]
BLAST of Csa5G161330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195056|gb|KGN50233.1|1.5e-85100.00hypothetical protein Csa_5G161330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G161330.1Csa5G161330.1mRNA