Csa5G161320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G161320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 6011241 .. 6011696 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCAATTCTACAACCCAGAATAAATGGTAATAATTAAATTAACACAACATAGAACCACAAGACATCAAAACATTCAAGAATTCAAAAATACGGAAATACTGAATTAAAATCAGCATTGGAATCCATTGGGAAGATTCTTGTTGCAAACGTTAAGGAGCAAGCTAAGGTGGAGTGGGATTTTAATCTTGTTCCCCAGAACGCTAGCTTTAATGGCAGTGCAAAGGCAGACAGCGGCTTCAAGATCAGCAAGACCATGAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGATGGTGAGGTCGACGAGGCCGCCAAGAAGCTTGGCGCAGACACCGATTTTAAGGGCATCCTTAGGACACTTTCCATAGTTAGATGGAGGGTTTGGTTTAGTAGGAGGGCATGGCTTGGGCTTGGGTGGGGCAGGGACATAGCAATTATCACATGCTGA

mRNA sequence

ATGAAACCAATTCTACAACCCAGAATAAATGCATTGGAATCCATTGGGAAGATTCTTGTTGCAAACGTTAAGGAGCAAGCTAAGGTGGAGTGGGATTTTAATCTTGTTCCCCAGAACGCTAGCTTTAATGGCAGTGCAAAGGCAGACAGCGGCTTCAAGATCAGCAAGACCATGAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGATGGTGAGGTCGACGAGGCCGCCAAGAAGCTTGGCGCAGACACCGATTTTAAGGGCATCCTTAGGACACTTTCCATAGTTAGATGGAGGGTTTGGTTTAGTAGGAGGGCATGGCTTGGGCTTGGGTGGGGCAGGGACATAGCAATTATCACATGCTGA

Coding sequence (CDS)

ATGAAACCAATTCTACAACCCAGAATAAATGCATTGGAATCCATTGGGAAGATTCTTGTTGCAAACGTTAAGGAGCAAGCTAAGGTGGAGTGGGATTTTAATCTTGTTCCCCAGAACGCTAGCTTTAATGGCAGTGCAAAGGCAGACAGCGGCTTCAAGATCAGCAAGACCATGAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGATGGTGAGGTCGACGAGGCCGCCAAGAAGCTTGGCGCAGACACCGATTTTAAGGGCATCCTTAGGACACTTTCCATAGTTAGATGGAGGGTTTGGTTTAGTAGGAGGGCATGGCTTGGGCTTGGGTGGGGCAGGGACATAGCAATTATCACATGCTGA

Protein sequence

MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQGAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAIITC*
Homology
[Close]
BLAST of Csa5G161320 vs. TrEMBL
Match: A0A0A0KP81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161320 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQ 60
           MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQ
Sbjct: 1   MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQ 60

Query: 61  GAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAII 120
           GAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAII
Sbjct: 61  GAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAII 120

Query: 121 TC 123
           TC
Sbjct: 121 TC 122

[Close]
BLAST of Csa5G161320 vs. NCBI nr
Match: gi|700195055|gb|KGN50232.1| (hypothetical protein Csa_5G161320 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQ 60
           MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQ
Sbjct: 1   MKPILQPRINALESIGKILVANVKEQAKVEWDFNLVPQNASFNGSAKADSGFKISKTMNQ 60

Query: 61  GAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAII 120
           GAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAII
Sbjct: 61  GAAWGHWGLADGEVDEAAKKLGADTDFKGILRTLSIVRWRVWFSRRAWLGLGWGRDIAII 120

Query: 121 TC 123
           TC
Sbjct: 121 TC 122

The following BLAST results are available for this feature:
BLAST of Csa5G161320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP81_CUCSA1.0e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161320 PE=4 SV=1[more]
BLAST of Csa5G161320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195055|gb|KGN50232.1|1.5e-64100.00hypothetical protein Csa_5G161320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU114579cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G161320.1Csa5G161320.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114579CU114579transcribed_cluster