Csa5G158520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G158520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 5727657 .. 5727854 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

mRNA sequence

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

Coding sequence (CDS)

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

Protein sequence

MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPWIGSLL*

Homology

[Close]

BLAST of Csa5G158520 vs. TrEMBL
Match: A0A0A0KR43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G158520 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.2e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60
          MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW
Sbjct: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60

Query: 61 IGSLL 66
          IGSLL
Sbjct: 61 IGSLL 65

[Close]

BLAST of Csa5G158520 vs. NCBI nr
Match: gi|700195019|gb|KGN50196.1| (hypothetical protein Csa_5G158520 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60
          MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW
Sbjct: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60

Query: 61 IGSLL 66
          IGSLL
Sbjct: 61 IGSLL 65

The following BLAST results are available for this feature:

BLAST of Csa5G158520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR43_CUCSA	8.2e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G158520 PE=4 SV=1	[more]

BLAST of Csa5G158520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195019\|gb\|KGN50196.1\|	1.2e-31	100.00	hypothetical protein Csa_5G158520 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G158520.1	Csa5G158520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G158520	Cucurbita maxima (Rimu)	cmacuB298
Csa5G158520	Cucurbita maxima (Rimu)	cmacuB608
Csa5G158520	Cucurbita maxima (Rimu)	cmacuB614
Csa5G158520	Cucurbita maxima (Rimu)	cmacuB838
Csa5G158520	Cucurbita moschata (Rifu)	cmocuB286
Csa5G158520	Cucurbita moschata (Rifu)	cmocuB331
Csa5G158520	Cucurbita moschata (Rifu)	cmocuB598
Csa5G158520	Cucurbita moschata (Rifu)	cmocuB606
Csa5G158520	Cucurbita moschata (Rifu)	cmocuB826
Csa5G158520	Melon (DHL92) v3.5.1	cumeB357
Csa5G158520	Melon (DHL92) v3.5.1	cumeB401
Csa5G158520	Melon (DHL92) v3.5.1	cumeB405
Csa5G158520	Watermelon (Charleston Gray)	cuwcgB351
Csa5G158520	Watermelon (Charleston Gray)	cuwcgB364
Csa5G158520	Watermelon (97103) v1	cuwmB375
Csa5G158520	Watermelon (97103) v1	cuwmB403
Csa5G158520	Watermelon (97103) v1	cuwmB408
Csa5G158520	Cucurbita pepo (Zucchini)	cpecuB174
Csa5G158520	Cucurbita pepo (Zucchini)	cpecuB227
Csa5G158520	Cucurbita pepo (Zucchini)	cpecuB733
Csa5G158520	Cucurbita pepo (Zucchini)	cpecuB872
Csa5G158520	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G158520	Bottle gourd (USVL1VR-Ls)	culsiB376
Csa5G158520	Bottle gourd (USVL1VR-Ls)	culsiB382
Csa5G158520	Bottle gourd (USVL1VR-Ls)	culsiB386
Csa5G158520	Cucumber (Gy14) v2	cgybcuB128
Csa5G158520	Cucumber (Gy14) v2	cgybcuB129
Csa5G158520	Cucumber (Gy14) v2	cgybcuB224
Csa5G158520	Melon (DHL92) v3.6.1	cumedB336
Csa5G158520	Melon (DHL92) v3.6.1	cumedB389
Csa5G158520	Melon (DHL92) v3.6.1	cumedB390
Csa5G158520	Melon (DHL92) v3.6.1	cumedB391
Csa5G158520	Silver-seed gourd	carcuB0519
Csa5G158520	Silver-seed gourd	carcuB0879
Csa5G158520	Silver-seed gourd	carcuB0882
Csa5G158520	Silver-seed gourd	carcuB0937
Csa5G158520	Silver-seed gourd	carcuB0940
Csa5G158520	Silver-seed gourd	carcuB0954
Csa5G158520	Watermelon (97103) v2	cuwmbB336
Csa5G158520	Watermelon (97103) v2	cuwmbB356
Csa5G158520	Wax gourd	cuwgoB438
Csa5G158520	Wax gourd	cuwgoB478
Csa5G158520	Wax gourd	cuwgoB484
Csa5G158520	Cucumber (Chinese Long) v2	cucuB096
Csa5G158520	Cucumber (Chinese Long) v2	cucuB100
Csa5G158520	Cucumber (Chinese Long) v2	cucuB102
Csa5G158520	Cucumber (Gy14) v1	cgycuB368
Csa5G158520	Cucumber (Gy14) v1	cgycuB434
Csa5G158520	Cucumber (Gy14) v1	cgycuB461