Csa5G158520 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G158520
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 5727657 .. 5727854 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

mRNA sequence

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

Coding sequence (CDS)

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

Protein sequence

MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPWIGSLL*
Homology
[Close]
BLAST of Csa5G158520 vs. TrEMBL
Match: A0A0A0KR43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G158520 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.2e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60
          MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW
Sbjct: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60

Query: 61 IGSLL 66
          IGSLL
Sbjct: 61 IGSLL 65

[Close]
BLAST of Csa5G158520 vs. NCBI nr
Match: gi|700195019|gb|KGN50196.1| (hypothetical protein Csa_5G158520 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60
          MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW
Sbjct: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60

Query: 61 IGSLL 66
          IGSLL
Sbjct: 61 IGSLL 65

The following BLAST results are available for this feature:
BLAST of Csa5G158520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR43_CUCSA8.2e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G158520 PE=4 SV=1[more]
BLAST of Csa5G158520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195019|gb|KGN50196.1|1.2e-31100.00hypothetical protein Csa_5G158520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G158520.1Csa5G158520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G158520Watermelon (97103) v2cuwmbB336
Csa5G158520Watermelon (97103) v2cuwmbB356
Csa5G158520Wax gourdcuwgoB438
Csa5G158520Wax gourdcuwgoB478
Csa5G158520Wax gourdcuwgoB484
Csa5G158520Cucumber (Chinese Long) v2cucuB096
Csa5G158520Cucumber (Chinese Long) v2cucuB100
Csa5G158520Cucumber (Chinese Long) v2cucuB102
Csa5G158520Cucumber (Gy14) v1cgycuB368
Csa5G158520Cucumber (Gy14) v1cgycuB434
Csa5G158520Cucumber (Gy14) v1cgycuB461
Csa5G158520Cucurbita maxima (Rimu)cmacuB298
Csa5G158520Cucurbita maxima (Rimu)cmacuB608
Csa5G158520Cucurbita maxima (Rimu)cmacuB614
Csa5G158520Cucurbita maxima (Rimu)cmacuB838
Csa5G158520Cucurbita moschata (Rifu)cmocuB286
Csa5G158520Cucurbita moschata (Rifu)cmocuB331
Csa5G158520Cucurbita moschata (Rifu)cmocuB598
Csa5G158520Cucurbita moschata (Rifu)cmocuB606
Csa5G158520Cucurbita moschata (Rifu)cmocuB826
Csa5G158520Melon (DHL92) v3.5.1cumeB357
Csa5G158520Melon (DHL92) v3.5.1cumeB401
Csa5G158520Melon (DHL92) v3.5.1cumeB405
Csa5G158520Watermelon (Charleston Gray)cuwcgB351
Csa5G158520Watermelon (Charleston Gray)cuwcgB364
Csa5G158520Watermelon (97103) v1cuwmB375
Csa5G158520Watermelon (97103) v1cuwmB403
Csa5G158520Watermelon (97103) v1cuwmB408
Csa5G158520Cucurbita pepo (Zucchini)cpecuB174
Csa5G158520Cucurbita pepo (Zucchini)cpecuB227
Csa5G158520Cucurbita pepo (Zucchini)cpecuB733
Csa5G158520Cucurbita pepo (Zucchini)cpecuB872
Csa5G158520Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G158520Bottle gourd (USVL1VR-Ls)culsiB376
Csa5G158520Bottle gourd (USVL1VR-Ls)culsiB382
Csa5G158520Bottle gourd (USVL1VR-Ls)culsiB386
Csa5G158520Cucumber (Gy14) v2cgybcuB128
Csa5G158520Cucumber (Gy14) v2cgybcuB129
Csa5G158520Cucumber (Gy14) v2cgybcuB224
Csa5G158520Melon (DHL92) v3.6.1cumedB336
Csa5G158520Melon (DHL92) v3.6.1cumedB389
Csa5G158520Melon (DHL92) v3.6.1cumedB390
Csa5G158520Melon (DHL92) v3.6.1cumedB391
Csa5G158520Silver-seed gourdcarcuB0519
Csa5G158520Silver-seed gourdcarcuB0879
Csa5G158520Silver-seed gourdcarcuB0882
Csa5G158520Silver-seed gourdcarcuB0937
Csa5G158520Silver-seed gourdcarcuB0940
Csa5G158520Silver-seed gourdcarcuB0954