Csa5G157270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G157270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 5534947 .. 5535854 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACCGCTAATAAGTGTTCGAACTCAATTCTCCCCAACTTGATATCGCTGTTTTCATCACCAGGGTTGAGAAGATAATGCAAGAAATCATGTTTAATCTTATTAGAACCCCAACTTTTTTTCTGTTCATCAATCCGTTCATCAATCATCTGCTCCAACACATCAAAGATCCTATCAAAATGAACACTTTGTTTCTTCTTAATCCCCTGCACATCAAATCTCTTCAACAATGGAAAATAATCTCCAAAATTCGGTTTCGCAGCTTCTTCCATAGCCCCTCTTACAGCCACCTTAAACTCTCTCCCAATTTTCGAATTCGGGTCCACAAAATCCTCCGAGAAAATGGTATTCCAAAGCAAATTCATCGAAGTCACAAACGCCACTTTTCCAAAATCCACTGCCTCATCACCTTTCAAAGCACATCTAGATATCTCTGTCACCAGCTCTGCCACTTGGCCTCGTCTGAGGTTCTCGTTGGCGTCGAGAATCCGGGCAGCGAACAACTGGGTGTTGCAAATTCGTCTGAGGTTTCGCCAGAGAGGTGAAACGGGCATCCATGGGAGGCCGAAAAGATCGTGGTTGTGAGTGGTCATGGAGTCAGGGACGGTTCTGGAGGAAAGAAATTGGTCGTGAGTTTGGAGGACTTGTTTGGCCATGGCGGAGGAGGAGATGACGACGGTGGTGATTTGGCCGAGTTTTAAGGTCATGATCGGACCATAGGATTTGGCGAGATTGGCTAGAGATTGGTGGGGTTTATCACCGAGAGCAAGAAGGTTGCCGATGAGTGGCAATGGCTTTGGGCCGGGAGGGAGGTTGGTAATTGGTCTTGTTTTTGAGATCATTGAAATTAGCCATGCAATGGAGAGTAGAACAATGAAGATCCACAGCAAATCCATCTCTTACTAATTT

mRNA sequence

ATGCAAGAAATCATGTTTAATCTTATTAGAACCCCAACTTTTTTTCTGTTCATCAATCCGTTCATCAATCATCTGCTCCAACACATCAAAGATCCTATCAAAATGAACACTTTGTTTCTTCTTAATCCCCTGCACATCAAATCTCTTCAACAATGGAAAATAATCTCCAAAATTCGGTTTCGCAGCTTCTTCCATAGCCCCTCTTACAGCCACCTTAAACTCTCTCCCAATTTTCGAATTCGGGTCCACAAAATCCTCCGAGAAAATGGTATTCCAAAGCAAATTCATCGAAGTCACAAACGCCACTTTTCCAAAATCCACTGCCTCATCACCTTTCAAAGCACATCTAGATATCTCTGTCACCAGCTCTGCCACTTGGCCTCGTCTGAGGTTCTCGTTGGCGTCGAGAATCCGGGCAGCGAACAACTGGGTGTTGCAAATTCGTCTGAGGTTTCGCCAGAGAGGTGA

Coding sequence (CDS)

ATGCAAGAAATCATGTTTAATCTTATTAGAACCCCAACTTTTTTTCTGTTCATCAATCCGTTCATCAATCATCTGCTCCAACACATCAAAGATCCTATCAAAATGAACACTTTGTTTCTTCTTAATCCCCTGCACATCAAATCTCTTCAACAATGGAAAATAATCTCCAAAATTCGGTTTCGCAGCTTCTTCCATAGCCCCTCTTACAGCCACCTTAAACTCTCTCCCAATTTTCGAATTCGGGTCCACAAAATCCTCCGAGAAAATGGTATTCCAAAGCAAATTCATCGAAGTCACAAACGCCACTTTTCCAAAATCCACTGCCTCATCACCTTTCAAAGCACATCTAGATATCTCTGTCACCAGCTCTGCCACTTGGCCTCGTCTGAGGTTCTCGTTGGCGTCGAGAATCCGGGCAGCGAACAACTGGGTGTTGCAAATTCGTCTGAGGTTTCGCCAGAGAGGTGA

Protein sequence

MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRFRSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLCHQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER*
Homology
[Close]
BLAST of Csa5G157270 vs. TrEMBL
Match: A0A0A0KKP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157270 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-84
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRF 60
           MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRF
Sbjct: 1   MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRF 60

Query: 61  RSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLC 120
           RSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLC
Sbjct: 61  RSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLC 120

Query: 121 HQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER 156
           HQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER
Sbjct: 121 HQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER 155

[Close]
BLAST of Csa5G157270 vs. NCBI nr
Match: gi|700194991|gb|KGN50168.1| (hypothetical protein Csa_5G157270 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 2.8e-84
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRF 60
           MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRF
Sbjct: 1   MQEIMFNLIRTPTFFLFINPFINHLLQHIKDPIKMNTLFLLNPLHIKSLQQWKIISKIRF 60

Query: 61  RSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLC 120
           RSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLC
Sbjct: 61  RSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSKIHCLITFQSTSRYLC 120

Query: 121 HQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER 156
           HQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER
Sbjct: 121 HQLCHLASSEVLVGVENPGSEQLGVANSSEVSPER 155

The following BLAST results are available for this feature:
BLAST of Csa5G157270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKP2_CUCSA2.0e-84100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157270 PE=4 SV=1[more]
BLAST of Csa5G157270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194991|gb|KGN50168.1|2.8e-84100.00hypothetical protein Csa_5G157270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU110922cucumber EST collection version 3.0transcribed_cluster
CU145567cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G157270.1Csa5G157270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145567CU145567transcribed_cluster
CU110922CU110922transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G157270Lsi09G003400Bottle gourd (USVL1VR-Ls)culsiB322
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G157270Melon (DHL92) v3.5.1cumeB357
Csa5G157270Melon (DHL92) v3.5.1cumeB401
Csa5G157270Melon (DHL92) v3.5.1cumeB405
Csa5G157270Watermelon (Charleston Gray)cuwcgB351
Csa5G157270Watermelon (Charleston Gray)cuwcgB364
Csa5G157270Watermelon (97103) v1cuwmB403
Csa5G157270Watermelon (97103) v1cuwmB408
Csa5G157270Cucurbita pepo (Zucchini)cpecuB046
Csa5G157270Cucurbita pepo (Zucchini)cpecuB174
Csa5G157270Cucurbita pepo (Zucchini)cpecuB733
Csa5G157270Cucurbita pepo (Zucchini)cpecuB872
Csa5G157270Bottle gourd (USVL1VR-Ls)culsiB376
Csa5G157270Bottle gourd (USVL1VR-Ls)culsiB386
Csa5G157270Cucumber (Gy14) v2cgybcuB128
Csa5G157270Cucumber (Gy14) v2cgybcuB129
Csa5G157270Cucumber (Gy14) v2cgybcuB224
Csa5G157270Melon (DHL92) v3.6.1cumedB336
Csa5G157270Melon (DHL92) v3.6.1cumedB389
Csa5G157270Melon (DHL92) v3.6.1cumedB390
Csa5G157270Melon (DHL92) v3.6.1cumedB391
Csa5G157270Silver-seed gourdcarcuB0519
Csa5G157270Silver-seed gourdcarcuB0882
Csa5G157270Silver-seed gourdcarcuB0954
Csa5G157270Watermelon (97103) v2cuwmbB336
Csa5G157270Watermelon (97103) v2cuwmbB356
Csa5G157270Wax gourdcuwgoB438
Csa5G157270Cucumber (Chinese Long) v2cucuB096
Csa5G157270Cucumber (Chinese Long) v2cucuB100
Csa5G157270Cucumber (Chinese Long) v2cucuB102
Csa5G157270Cucumber (Gy14) v1cgycuB368
Csa5G157270Cucumber (Gy14) v1cgycuB434
Csa5G157270Cucumber (Gy14) v1cgycuB461
Csa5G157270Cucurbita maxima (Rimu)cmacuB298
Csa5G157270Cucurbita maxima (Rimu)cmacuB420
Csa5G157270Cucurbita maxima (Rimu)cmacuB608
Csa5G157270Cucurbita maxima (Rimu)cmacuB614
Csa5G157270Cucurbita maxima (Rimu)cmacuB838
Csa5G157270Cucurbita moschata (Rifu)cmocuB286
Csa5G157270Cucurbita moschata (Rifu)cmocuB411
Csa5G157270Cucurbita moschata (Rifu)cmocuB598
Csa5G157270Cucurbita moschata (Rifu)cmocuB606
Csa5G157270Cucurbita moschata (Rifu)cmocuB826