Csa5G154890 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G154890
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 5246482 .. 5246846 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCTATGTCACAAAAGAAAATTGTGCCATTCATGTCGTCGTTGCTTAGCTTCTCACTGTTGGCATTTTCGATCAGTTCCCGATCAGTTTCCATCCAGATCCATCCTCAATTATCTGTCCTGCGTCCCCACCGCTTCGCTTTCCTATGGGCTTGTGGCTTACTTCTTCCATGCAACCGCTGGGGTCGTCGAGCACTTGTCAAAATTCGGCGATCCACTGCACACTTCGCCTCGCGTCGTCATATCTCTGCTCGATTTTTCTCTAGGTTTCTTCAAACCCACCTCCGTCGCGCACAGATTCGACCCCATTTTCTTTGATCTCTTACCGGCGTCGTTCAAATTCAATGTCGATCAACTCCCACTTTC

mRNA sequence

ATGTCACAAAAGAAAATTGTGCCATTCATGTCGTCGTTGCTTAGCTTCTCACTGTTGGCATTTTCGATCAGTTCCCGATCAGTTTCCATCCAGATCCATCCTCAATTATCTGTCCTGCGTCCCCACCGCTTCGCTTTCCTATGGGCTTGTGGCTTACTTCTTCCATGCAACCGCTGGGGTCGTCGAGCACTTGTCAAAATTCGGCGATCCACTGCACACTTCGCCTCGCGTCGTCATATCTCTGCTCGATTTTTCTCTAGGTTTCTTCAAACCCACCTCCGTCGCGCACAGATTCGACCCCATTTTCTTTGA

Coding sequence (CDS)

ATGTCACAAAAGAAAATTGTGCCATTCATGTCGTCGTTGCTTAGCTTCTCACTGTTGGCATTTTCGATCAGTTCCCGATCAGTTTCCATCCAGATCCATCCTCAATTATCTGTCCTGCGTCCCCACCGCTTCGCTTTCCTATGGGCTTGTGGCTTACTTCTTCCATGCAACCGCTGGGGTCGTCGAGCACTTGTCAAAATTCGGCGATCCACTGCACACTTCGCCTCGCGTCGTCATATCTCTGCTCGATTTTTCTCTAGGTTTCTTCAAACCCACCTCCGTCGCGCACAGATTCGACCCCATTTTCTTTGA

Protein sequence

MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWGRRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL*
Homology
[Close]
BLAST of Csa5G154890 vs. TrEMBL
Match: A0A0A0KNZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154890 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWG 60
           MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWG
Sbjct: 1   MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWG 60

Query: 61  RRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL 104
           RRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL
Sbjct: 61  RRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL 103

[Close]
BLAST of Csa5G154890 vs. NCBI nr
Match: gi|700194950|gb|KGN50127.1| (hypothetical protein Csa_5G154890 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 8.0e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWG 60
           MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWG
Sbjct: 1   MSQKKIVPFMSSLLSFSLLAFSISSRSVSIQIHPQLSVLRPHRFAFLWACGLLLPCNRWG 60

Query: 61  RRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL 104
           RRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL
Sbjct: 61  RRALVKIRRSTAHFASRRHISARFFSRFLQTHLRRAQIRPHFL 103

The following BLAST results are available for this feature:
BLAST of Csa5G154890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNZ1_CUCSA5.6e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154890 PE=4 SV=1[more]
BLAST of Csa5G154890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194950|gb|KGN50127.1|8.0e-51100.00hypothetical protein Csa_5G154890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G154890.1Csa5G154890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G154890Silver-seed gourdcarcuB0939
Csa5G154890Silver-seed gourdcarcuB0954
Csa5G154890Watermelon (97103) v2cuwmbB336
Csa5G154890Watermelon (97103) v2cuwmbB386
Csa5G154890Wax gourdcuwgoB451
Csa5G154890Wax gourdcuwgoB479
Csa5G154890Cucumber (Chinese Long) v2cucuB102
Csa5G154890Cucumber (Gy14) v1cgycuB434
Csa5G154890Cucurbita maxima (Rimu)cmacuB298
Csa5G154890Cucurbita maxima (Rimu)cmacuB344
Csa5G154890Cucurbita maxima (Rimu)cmacuB420
Csa5G154890Cucurbita maxima (Rimu)cmacuB608
Csa5G154890Cucurbita moschata (Rifu)cmocuB286
Csa5G154890Cucurbita moschata (Rifu)cmocuB332
Csa5G154890Cucurbita moschata (Rifu)cmocuB411
Csa5G154890Cucurbita moschata (Rifu)cmocuB598
Csa5G154890Melon (DHL92) v3.5.1cumeB357
Csa5G154890Melon (DHL92) v3.5.1cumeB405
Csa5G154890Watermelon (Charleston Gray)cuwcgB364
Csa5G154890Watermelon (Charleston Gray)cuwcgB398
Csa5G154890Watermelon (97103) v1cuwmB403
Csa5G154890Watermelon (97103) v1cuwmB408
Csa5G154890Cucurbita pepo (Zucchini)cpecuB014
Csa5G154890Cucurbita pepo (Zucchini)cpecuB046
Csa5G154890Cucurbita pepo (Zucchini)cpecuB174
Csa5G154890Cucurbita pepo (Zucchini)cpecuB226
Csa5G154890Cucurbita pepo (Zucchini)cpecuB736
Csa5G154890Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G154890Bottle gourd (USVL1VR-Ls)culsiB376
Csa5G154890Cucumber (Gy14) v2cgybcuB128
Csa5G154890Cucumber (Gy14) v2cgybcuB224
Csa5G154890Melon (DHL92) v3.6.1cumedB336
Csa5G154890Melon (DHL92) v3.6.1cumedB391