Csa5G153060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G153060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 5000138 .. 5000703 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCATCTCCATTTTTTTCTTTTGCTTCTTGTGGATTCAAGCAGACGCAGGTGACCCATTTGCCCCATTTCTCTGTTTTTTGTTATTGCATTATTTGTTCTGCCATTGTAATAGTGCTTTACTTGCCACTAATATTGATTGGAAAAAGTTTGTTCATCTTTCATTTTTCTAGCCCCATCAAACCCACTTTTCTTTTTCTTTCCATAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGATTATAGTGTCATTTCACCATTAAGATGGCCTACCTCTTTAGTTTTTAAGTGGAGAAATGATATGAAGCCTCTCGAGAAAGCTTCCTCTTTGGTTGCTTGGCCAATGGCCACTATTTGTCTTGGAATTGATGGAAAAAGTTTCACTCATTGCTTAAAATATAGCTTGTTTGCTTTCTTTACTTTCTTTTATTTGCTCAAATACGTGAAGGGGAAAGCAATATCTGAGTTTTGAAAGAAATGGGAAGATATTAATACATTTTGTTCACTTTTTCTTCCTTTCTTCTCGCTGC

mRNA sequence

ATGGGTCCATCTCCATTTTTTTCTTTTGCTTCTTGTGGATTCAAGCAGACGCAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGATTATAGTGTCATTTCACCATTAAGATGGCCTACCTCTTTAGTTTTTAAGTGGAGAAATGATATGAAGCCTCTCGAGAAAGCTTCCTCTTTGGTTGCTTGGCCAATGGCCACTATTTGTCTTGGAATTGATGGAAAAAGTTTCACTCATTGCTTAAAATATAGCTTGTTTGCTTTCTTTACTTTCTTTTATTTGCTCAAATACGTGAAGGGGAAAGCAATATCTGAGTTTTGA

Coding sequence (CDS)

ATGGGTCCATCTCCATTTTTTTCTTTTGCTTCTTGTGGATTCAAGCAGACGCAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGATTATAGTGTCATTTCACCATTAAGATGGCCTACCTCTTTAGTTTTTAAGTGGAGAAATGATATGAAGCCTCTCGAGAAAGCTTCCTCTTTGGTTGCTTGGCCAATGGCCACTATTTGTCTTGGAATTGATGGAAAAAGTTTCACTCATTGCTTAAAATATAGCTTGTTTGCTTTCTTTACTTTCTTTTATTTGCTCAAATACGTGAAGGGGAAAGCAATATCTGAGTTTTGA

Protein sequence

MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRNDMKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF*
Homology
[Close]
BLAST of Csa5G153060 vs. TrEMBL
Match: A0A0A0KQW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153060 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60
           MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND
Sbjct: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60

Query: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 117
           MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF
Sbjct: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 116

[Close]
BLAST of Csa5G153060 vs. NCBI nr
Match: gi|700194914|gb|KGN50091.1| (hypothetical protein Csa_5G153060 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.7e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60
           MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND
Sbjct: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60

Query: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 117
           MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF
Sbjct: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 116

The following BLAST results are available for this feature:
BLAST of Csa5G153060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQW2_CUCSA1.2e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153060 PE=4 SV=1[more]
BLAST of Csa5G153060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194914|gb|KGN50091.1|1.7e-62100.00hypothetical protein Csa_5G153060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127540cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G153060.1Csa5G153060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127540CU127540transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G153060Lsi09G002510Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G153060CSPI05G05350Wild cucumber (PI 183967)cpicuB240
Csa5G153060Cp4.1LG05g03310Cucurbita pepo (Zucchini)cpecuB736
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G153060Watermelon (97103) v2cuwmbB336
Csa5G153060Watermelon (97103) v2cuwmbB382
Csa5G153060Watermelon (97103) v2cuwmbB389
Csa5G153060Wax gourdcuwgoB451
Csa5G153060Cucumber (Chinese Long) v2cucuB097
Csa5G153060Cucumber (Chinese Long) v2cucuB164
Csa5G153060Cucumber (Gy14) v1cgycuB194
Csa5G153060Cucumber (Gy14) v1cgycuB434
Csa5G153060Cucurbita maxima (Rimu)cmacuB298
Csa5G153060Cucurbita maxima (Rimu)cmacuB366
Csa5G153060Cucurbita maxima (Rimu)cmacuB608
Csa5G153060Cucurbita moschata (Rifu)cmocuB286
Csa5G153060Cucurbita moschata (Rifu)cmocuB598
Csa5G153060Melon (DHL92) v3.5.1cumeB357
Csa5G153060Melon (DHL92) v3.5.1cumeB385
Csa5G153060Watermelon (Charleston Gray)cuwcgB364
Csa5G153060Watermelon (Charleston Gray)cuwcgB393
Csa5G153060Watermelon (Charleston Gray)cuwcgB399
Csa5G153060Watermelon (97103) v1cuwmB399
Csa5G153060Watermelon (97103) v1cuwmB408
Csa5G153060Cucurbita pepo (Zucchini)cpecuB174
Csa5G153060Bottle gourd (USVL1VR-Ls)culsiB333
Csa5G153060Bottle gourd (USVL1VR-Ls)culsiB381
Csa5G153060Cucumber (Gy14) v2cgybcuB126
Csa5G153060Cucumber (Gy14) v2cgybcuB224
Csa5G153060Cucumber (Gy14) v2cgybcuB278
Csa5G153060Melon (DHL92) v3.6.1cumedB336
Csa5G153060Melon (DHL92) v3.6.1cumedB369
Csa5G153060Silver-seed gourdcarcuB0939
Csa5G153060Silver-seed gourdcarcuB0954