Csa5G146880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G146880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 4134371 .. 4134562 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACCGTGAAGAACTCAAACTTCCCAACGCTCGTAACATTGAATACGTACTGGAAAGCTCATACGTCTCTTTGGCTAGCATATCATGCTTATCGACTGCAGTTGAACTTAGGAACGATACTACTCTACCTAACTCAGATGTTAACCTACAAGCAAATCTCACACCTCAGTACCACAATAAGCTTTAA

mRNA sequence

ATGAACAACCGTGAAGAACTCAAACTTCCCAACGCTCGTAACATTGAATACGTACTGGAAAGCTCATACGTCTCTTTGGCTAGCATATCATGCTTATCGACTGCAGTTGAACTTAGGAACGATACTACTCTACCTAACTCAGATGTTAACCTACAAGCAAATCTCACACCTCAGTACCACAATAAGCTTTAA

Coding sequence (CDS)

ATGAACAACCGTGAAGAACTCAAACTTCCCAACGCTCGTAACATTGAATACGTACTGGAAAGCTCATACGTCTCTTTGGCTAGCATATCATGCTTATCGACTGCAGTTGAACTTAGGAACGATACTACTCTACCTAACTCAGATGTTAACCTACAAGCAAATCTCACACCTCAGTACCACAATAAGCTTTAA

Protein sequence

MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYHNKL*
Homology
[Close]
BLAST of Csa5G146880 vs. TrEMBL
Match: A0A0A0KJT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146880 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYH 60
          MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYH
Sbjct: 1  MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYH 60

Query: 61 NKL 64
          NKL
Sbjct: 61 NKL 63

[Close]
BLAST of Csa5G146880 vs. NCBI nr
Match: gi|700194788|gb|KGN49965.1| (hypothetical protein Csa_5G146880 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYH 60
          MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYH
Sbjct: 1  MNNREELKLPNARNIEYVLESSYVSLASISCLSTAVELRNDTTLPNSDVNLQANLTPQYH 60

Query: 61 NKL 64
          NKL
Sbjct: 61 NKL 63

The following BLAST results are available for this feature:
BLAST of Csa5G146880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJT2_CUCSA7.7e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146880 PE=4 SV=1[more]
BLAST of Csa5G146880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194788|gb|KGN49965.1|1.1e-26100.00hypothetical protein Csa_5G146880 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G146880.1Csa5G146880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score: