Csa5G140470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G140470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 3839357 .. 3840071 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGGGAAACTTCTGCGAGGAAGTCTCTTACTATAAGGAAGCAGATTATTCCTGTATCTGCAAAGTTCCGAGTTAACGTCGCACATAAATTCCTAACGATGTTGATGGACTTCCTTTTTAAGGACGTTCTCCGTTGTGGGTGGTCTCATATTCCGTCGCCATGTGGAGCAGCGTCGCTGCAATTACCACTTTGGACTGGCCATGAGACAAACATTTTAGTTTCTCTATGGCTAAACTTTTAGTGATGTTTGTGTTATTTATTTTGTTTATGTGATGGGGGATTATAGATCCAATCCTTTACTAGATATGGAGCGAACGCGTTATGTTCGTATATTACCGGAGTTAACGTCACAAAGAAATTATTGTCGATGTTGATGGCTCCTGTTTGGAATCTCCATCGACTGTTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCTTTTACTTCTTGGGATTGGCCATGAGACCTACATTTTATTCTTAATGTTTTAGTAATCTGCTGATGATGATATCGGTTAACAAAATACCATCTTTCGGGACTGAATGGCTTCTCAAGCCTTGCTGTCAAATCCGATAATCTGAGGCTTCTCTTTTATGTATTTGCTTTCTGTTTCATTTTTTCTTTTGCAGGTGTTGGAAATGGGAACTATTGCCAGCCATTCGGACTCCATTGATTTACCTTACGACTGTGGAAGCTCTGTTTAG

mRNA sequence

ATGCGACGGGAAACTTCTGCGAGGAAGTCTCTTACTATAAGGAAGCAGATTATTCCTGTATCTGCAAAGTTCCGAGTTAACGTCGCACATAAATTCCTAACGATGTTGATGGACTTCCTTTTTAAGGACGTTCTCCGTTGTGGGTGGTCTCATATTCCGTCGCCATGTGGAGCAGCGTCGCTGCAATTACCACTTTGGACTGGCCATGAGACAAACATTTTAATCCAATCCTTTACTAGATATGGAGCGAACGCGTTATGTTCGTATATTACCGGAGTTAACGTCACAAAGAAATTATTGTCGATGTTGATGGCTCCTGTTTGGAATCTCCATCGACTGTTGGTGTTGGAAATGGGAACTATTGCCAGCCATTCGGACTCCATTGATTTACCTTACGACTGTGGAAGCTCTGTTTAG

Coding sequence (CDS)

ATGCGACGGGAAACTTCTGCGAGGAAGTCTCTTACTATAAGGAAGCAGATTATTCCTGTATCTGCAAAGTTCCGAGTTAACGTCGCACATAAATTCCTAACGATGTTGATGGACTTCCTTTTTAAGGACGTTCTCCGTTGTGGGTGGTCTCATATTCCGTCGCCATGTGGAGCAGCGTCGCTGCAATTACCACTTTGGACTGGCCATGAGACAAACATTTTAATCCAATCCTTTACTAGATATGGAGCGAACGCGTTATGTTCGTATATTACCGGAGTTAACGTCACAAAGAAATTATTGTCGATGTTGATGGCTCCTGTTTGGAATCTCCATCGACTGTTGGTGTTGGAAATGGGAACTATTGCCAGCCATTCGGACTCCATTGATTTACCTTACGACTGTGGAAGCTCTGTTTAG

Protein sequence

MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGTIASHSDSIDLPYDCGSSV*
Homology
[Close]
BLAST of Csa5G140470 vs. TrEMBL
Match: A0A0A0KQD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140470 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60
           MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS
Sbjct: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60

Query: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120
           LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT
Sbjct: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120

Query: 121 IASHSDSIDLPYDCGSSV 139
           IASHSDSIDLPYDCGSSV
Sbjct: 121 IASHSDSIDLPYDCGSSV 138

[Close]
BLAST of Csa5G140470 vs. NCBI nr
Match: gi|700194744|gb|KGN49921.1| (hypothetical protein Csa_5G140470 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 5.8e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60
           MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS
Sbjct: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60

Query: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120
           LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT
Sbjct: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120

Query: 121 IASHSDSIDLPYDCGSSV 139
           IASHSDSIDLPYDCGSSV
Sbjct: 121 IASHSDSIDLPYDCGSSV 138

[Close]
BLAST of Csa5G140470 vs. NCBI nr
Match: gi|659074301|ref|XP_008437532.1| (PREDICTED: uncharacterized protein LOC103482917 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 35 MLMDFLFKDVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSFTRY 82
          MLMD LFKDVLRCGWSHIPSPCGAASLQLP WTGHETNIL+     +
Sbjct: 1  MLMDVLFKDVLRCGWSHIPSPCGAASLQLPPWTGHETNILVYQLQNF 47

The following BLAST results are available for this feature:
BLAST of Csa5G140470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQD9_CUCSA4.1e-73100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G140470 PE=4 SV=1[more]
BLAST of Csa5G140470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194744|gb|KGN49921.1|5.8e-73100.00hypothetical protein Csa_5G140470 [Cucumis sativus][more]
gi|659074301|ref|XP_008437532.1|2.1e-1480.85PREDICTED: uncharacterized protein LOC103482917 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU110179cucumber EST collection version 3.0transcribed_cluster
CU137065cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G140470.1Csa5G140470.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU137065CU137065transcribed_cluster
CU110179CU110179transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G140470Silver-seed gourdcarcuB0732
Csa5G140470Silver-seed gourdcarcuB1005
Csa5G140470Watermelon (97103) v2cuwmbB336
Csa5G140470Watermelon (97103) v2cuwmbB381
Csa5G140470Watermelon (97103) v2cuwmbB384
Csa5G140470Watermelon (97103) v2cuwmbB395
Csa5G140470Wax gourdcuwgoB440
Csa5G140470Wax gourdcuwgoB480
Csa5G140470Cucumber (Chinese Long) v2cucuB095
Csa5G140470Cucumber (Chinese Long) v2cucuB142
Csa5G140470Cucumber (Gy14) v1cgycuB131
Csa5G140470Cucumber (Gy14) v1cgycuB295
Csa5G140470Cucumber (Gy14) v1cgycuB369
Csa5G140470Cucurbita maxima (Rimu)cmacuB292
Csa5G140470Cucurbita maxima (Rimu)cmacuB342
Csa5G140470Cucurbita maxima (Rimu)cmacuB612
Csa5G140470Cucurbita moschata (Rifu)cmocuB279
Csa5G140470Cucurbita moschata (Rifu)cmocuB329
Csa5G140470Cucurbita moschata (Rifu)cmocuB603
Csa5G140470Melon (DHL92) v3.5.1cumeB357
Csa5G140470Melon (DHL92) v3.5.1cumeB402
Csa5G140470Melon (DHL92) v3.5.1cumeB408
Csa5G140470Watermelon (Charleston Gray)cuwcgB364
Csa5G140470Watermelon (Charleston Gray)cuwcgB392
Csa5G140470Watermelon (Charleston Gray)cuwcgB395
Csa5G140470Watermelon (Charleston Gray)cuwcgB406
Csa5G140470Watermelon (97103) v1cuwmB397
Csa5G140470Watermelon (97103) v1cuwmB402
Csa5G140470Watermelon (97103) v1cuwmB408
Csa5G140470Cucurbita pepo (Zucchini)cpecuB188
Csa5G140470Cucurbita pepo (Zucchini)cpecuB225
Csa5G140470Cucurbita pepo (Zucchini)cpecuB730
Csa5G140470Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G140470Bottle gourd (USVL1VR-Ls)culsiB377
Csa5G140470Bottle gourd (USVL1VR-Ls)culsiB378
Csa5G140470Cucumber (Gy14) v2cgybcuB125
Csa5G140470Cucumber (Gy14) v2cgybcuB183
Csa5G140470Cucumber (Gy14) v2cgybcuB224
Csa5G140470Melon (DHL92) v3.6.1cumedB336
Csa5G140470Melon (DHL92) v3.6.1cumedB386
Csa5G140470Melon (DHL92) v3.6.1cumedB395