Csa5G139320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G139320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 3498054 .. 3498305 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACAGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

mRNA sequence

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACAGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

Coding sequence (CDS)

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACAGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

Protein sequence

MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRSGRRERPLAPPVRLAWSVPIVSLT*
Homology
[Close]
BLAST of Csa5G139320 vs. TrEMBL
Match: A0A0A0KLW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRRERPLAPPVRLAWSVPIVSLT 84
          GRRERPLAPPVRLAWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of Csa5G139320 vs. NCBI nr
Match: gi|700194677|gb|KGN49854.1| (hypothetical protein Csa_5G139320 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.3e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRRERPLAPPVRLAWSVPIVSLT 84
          GRRERPLAPPVRLAWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

The following BLAST results are available for this feature:
BLAST of Csa5G139320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLW1_CUCSA3.0e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139320 PE=4 SV=1[more]
BLAST of Csa5G139320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194677|gb|KGN49854.1|4.3e-39100.00hypothetical protein Csa_5G139320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU140982cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G139320.1Csa5G139320.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU140982CU140982transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G139320Lsi09G000170Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G139320CmoCh15G010850Cucurbita moschata (Rifu)cmocuB279
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G139320Melon (DHL92) v3.5.1cumeB357
Csa5G139320Melon (DHL92) v3.5.1cumeB402
Csa5G139320Watermelon (Charleston Gray)cuwcgB364
Csa5G139320Watermelon (Charleston Gray)cuwcgB392
Csa5G139320Watermelon (Charleston Gray)cuwcgB395
Csa5G139320Watermelon (97103) v1cuwmB397
Csa5G139320Watermelon (97103) v1cuwmB402
Csa5G139320Watermelon (97103) v1cuwmB408
Csa5G139320Cucurbita pepo (Zucchini)cpecuB043
Csa5G139320Cucurbita pepo (Zucchini)cpecuB188
Csa5G139320Cucurbita pepo (Zucchini)cpecuB225
Csa5G139320Cucurbita pepo (Zucchini)cpecuB622
Csa5G139320Cucurbita pepo (Zucchini)cpecuB730
Csa5G139320Bottle gourd (USVL1VR-Ls)culsiB378
Csa5G139320Bottle gourd (USVL1VR-Ls)culsiB379
Csa5G139320Cucumber (Gy14) v2cgybcuB125
Csa5G139320Cucumber (Gy14) v2cgybcuB224
Csa5G139320Melon (DHL92) v3.6.1cumedB336
Csa5G139320Melon (DHL92) v3.6.1cumedB386
Csa5G139320Melon (DHL92) v3.6.1cumedB393
Csa5G139320Silver-seed gourdcarcuB0301
Csa5G139320Silver-seed gourdcarcuB0536
Csa5G139320Silver-seed gourdcarcuB0570
Csa5G139320Silver-seed gourdcarcuB1005
Csa5G139320Watermelon (97103) v2cuwmbB336
Csa5G139320Watermelon (97103) v2cuwmbB381
Csa5G139320Watermelon (97103) v2cuwmbB384
Csa5G139320Wax gourdcuwgoB453
Csa5G139320Wax gourdcuwgoB481
Csa5G139320Cucumber (Chinese Long) v2cucuB095
Csa5G139320Cucumber (Chinese Long) v2cucuB098
Csa5G139320Cucumber (Gy14) v1cgycuB004
Csa5G139320Cucumber (Gy14) v1cgycuB309
Csa5G139320Cucumber (Gy14) v1cgycuB369
Csa5G139320Cucurbita maxima (Rimu)cmacuB292
Csa5G139320Cucurbita maxima (Rimu)cmacuB342
Csa5G139320Cucurbita maxima (Rimu)cmacuB419
Csa5G139320Cucurbita maxima (Rimu)cmacuB612
Csa5G139320Cucurbita moschata (Rifu)cmocuB251
Csa5G139320Cucurbita moschata (Rifu)cmocuB329
Csa5G139320Cucurbita moschata (Rifu)cmocuB409
Csa5G139320Cucurbita moschata (Rifu)cmocuB603