Csa5G106000 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G106000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 2888639 .. 2889007 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGGTGTGGGAGATATGTTGCAGTGATTGAGGTGAACATTGTTGATGTGTCGGATGGCAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

mRNA sequence

ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

Coding sequence (CDS)

ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

Protein sequence

MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNVATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC*
Homology
[Close]
BLAST of Csa5G106000 vs. TrEMBL
Match: A0A0A0KJ37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G106000 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60
           MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV
Sbjct: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60

Query: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 104
           ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
Sbjct: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103

[Close]
BLAST of Csa5G106000 vs. NCBI nr
Match: gi|700194573|gb|KGN49750.1| (hypothetical protein Csa_5G106000 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60
           MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV
Sbjct: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60

Query: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 104
           ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
Sbjct: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103

The following BLAST results are available for this feature:
BLAST of Csa5G106000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ37_CUCSA1.5e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G106000 PE=4 SV=1[more]
BLAST of Csa5G106000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194573|gb|KGN49750.1|2.1e-51100.00hypothetical protein Csa_5G106000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0019530 taurine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004351 glutamate decarboxylase activity
molecular_function GO:0030170 pyridoxal phosphate binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G106000.1Csa5G106000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G106000CmoCh15G009080Cucurbita moschata (Rifu)cmocuB290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G106000Cucurbita moschata (Rifu)cmocuB719
Csa5G106000Melon (DHL92) v3.5.1cumeB362
Csa5G106000Watermelon (Charleston Gray)cuwcgB365
Csa5G106000Watermelon (97103) v1cuwmB409
Csa5G106000Cucurbita pepo (Zucchini)cpecuB178
Csa5G106000Cucurbita pepo (Zucchini)cpecuB420
Csa5G106000Bottle gourd (USVL1VR-Ls)culsiB323
Csa5G106000Cucumber (Gy14) v2cgybcuB225
Csa5G106000Melon (DHL92) v3.6.1cumedB340
Csa5G106000Silver-seed gourdcarcuB0511
Csa5G106000Silver-seed gourdcarcuB0842
Csa5G106000Watermelon (97103) v2cuwmbB337
Csa5G106000Wax gourdcuwgoB439
Csa5G106000Cucumber (Gy14) v1cgycuB526
Csa5G106000Cucurbita maxima (Rimu)cmacuB302
Csa5G106000Cucurbita maxima (Rimu)cmacuB727